DN617942

Overview
NameDN617942
Unique NameDN617942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_AEDAL (La protein homolog OS=Aedes albopictus PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.545e-45
Identity = 90/203 (44.33%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  164 DRKNPERMPEMAET---ESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGF-PLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELIRK 760
            + + PE   E  E    E+S N S L+ + + Q+EYYFGD NL +DKFL+ +++KDEGWV +  LL F RL +L++D  VI+ A +K+   L+E++EDR+ +RRHP+R +P  +E  R  +  R++YVKGF P E   M ++L+F   F KI N+  R Y DKA K++ FKGS+FV F TK+   +F+    + Y G ELIRK
Sbjct:   18 EEEAPETTAEQTEESAQETSENVSKLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDAIEKSDEGLIEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEEGTQMSELLEFFEPFEKITNIVMRKYHDKATKKYLFKGSVFVTFATKDHCAEFLKKEKLGYKGKELIRK 220          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_DROME (La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.180e-40
Identity = 82/204 (40.20%), Postives = 132/204 (64.71%), Query Frame = 2
Query:  158 IFDRKNPE--RMPEMAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDE-GWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELIRK 760
            + + KN +  + P  A  E++   +  +  I+ Q+EYYFGD NL +DKFLR ++ K+E GWV +S L+ F RLA+L+ D+  I++A  K+   LVE++ED+  +RRHP+R +P H+E  R  + +R+ Y KGFPL+ + + ++L F + + K+ N+  R ++DK  K +KFKGSIF+ F TK+ A+ F+    + Y   EL+RK
Sbjct:   24 VLEAKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLD-SQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRK 226          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_HUMAN (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.763e-36
Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            MAE   +   + L+  I  QIEYYFGDFNL +DKFL+ ++  DEGWV +  +++FNRL  LT D +VI+ A  K+ + L+E++ED+  +RR P + +P   + +++ V +RS+Y+KGFP + AT+DDI +++   G++ N+  R    KA     FKGSIFV F + E A+KF+     KY   +L+
Sbjct:    1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHKA-----FKGSIFVVFDSIESAKKFVETPGQKYKETDLL 181          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_MOUSE (Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.130e-36
Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            MAE   +   + L+  I  QIEYYFGDFNL +DKFL+ ++  DEGWV + T+++FNRL  LT D +VI+ A  K+ + L+E++ D+  +RR P R +P   + +++ V +RS+Y+KGFP + AT+DDI +++   G+I N+  R    K      FKGSIF  F + + A+KF+ I   KY    L+
Sbjct:    1 MAENGDNEKMTALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLDDKGQILNIQMRRTLHKT-----FKGSIFAVFDSIQSAKKFVEIPGQKYKDTNLL 181          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAB_XENLA (Lupus La protein homolog B OS=Xenopus laevis GN=ssb-B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.143e-35
Identity = 72/175 (41.14%), Postives = 119/175 (68.00%), Query Frame = 2
Query:  230 LDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            LD  I EQIEYYFGD NL +DKFL+ ++  D GWV + T+++FNRL+ LT D ++I+ A KK+ + L+E+NE++  +RR P + +P  +E ++++   RS+Y+KGFP  T  +D+I ++++  G I+N+  R        Q +FKGS+F+ F T++ A+KF+   ++KY  N++I
Sbjct:   12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQALKKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTIT-NLDEIKEWLNDKGPIENIQMRRTL-----QREFKGSVFLVFNTEDGAKKFLEDKNLKYKDNDMI 180          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_RAT (Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 76/187 (40.64%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            MAE   +   + L+  I  QIEYYFGDFNL +DKFL+ ++  DEGWV + T+++FNRL  LT D +VI+ A  K+ ++L+E++ D+  +RR P R +P   + +++ V +RS+Y+KGFP + AT+DDI +++   G+I N+  R    K      FKGSIF  F + + A+KF+     KY    L+
Sbjct:    1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLDDKGQILNIQMRRTLHKT-----FKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLL 181          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_BOVIN (Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 75/187 (40.11%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            MAE   +   + L+  I  QIEYYFGDFNL +DKFL+ ++  DEGWV +  +++FNRL  LT D +VI+ A  K+ + L+E++ED+  +RR P + +P   + +++ V +RS+Y+KGFP + A +DDI +++   G++ N+  R    KA     FKGSIF  F + E A+KF+     KY   +L+
Sbjct:    1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-AALDDIKEWLEDKGQVLNIQMRRTLHKA-----FKGSIFAVFDSIESAKKFVETPGQKYKDTDLL 181          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAA_XENLA (Lupus La protein homolog A OS=Xenopus laevis GN=ssb-A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 73/186 (39.25%), Postives = 121/186 (65.05%), Query Frame = 2
Query:  194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNEL 751
            MAE          D  I EQIEYYFGD NL +DKFL+ ++  D+GWV + T+++FNRL+ LT D + I+ A KK+ + L+E+NE++  +RR P + +P  ++ +++++  +S+Y+KGFP  +A +DD+ +++   G I+N+  R        Q +FKGSIF+ F T +DA+KF+   ++KY  N++
Sbjct:    1 MAENGDKEQKLDSDTKICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKKSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYIKGFP-TSAILDDVKEWLKDKGPIENIQMRRTL-----QREFKGSIFIIFNTDDDAKKFLENRNLKYKDNDM 180          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAH1_SCHPO (La protein homolog OS=Schizosaccharomyces pombe GN=sla1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2
Query:  179 ERMPEMAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILK--FMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFM 715
            E   E  E +   + S  +  +++Q+E+YF D NL  DKFL     K++GWV I T+  F R+    + ++ I++A +K+P  L+E++E  + VR    R +P        +V +RS+Y KGF  E       L+  F    G I  V  R   DK     KFKGS+FV F   + A KF+
Sbjct:   46 EETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSP-ELLEVDEAGEKVR----RMIPL-VRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPISAVRMRRDDDK-----KFKGSVFVEFKEPDVANKFL 214          
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAH1_YEAST (La protein homolog OS=Saccharomyces cerevisiae GN=LAH1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  245 VEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETA-------TMDDILKFMSTFGKIDNV-FKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754
            ++Q+E+YF +FN   D+FLR    K++GWV IST+  FNR+    + VD ++ A +   S ++E++ D + V+R     + A     R     R++ V  FP E           +++  F    G+I+ V  +R + +K     KF G++ V F T  + E F+   S     NE++
Sbjct:   34 LKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKY-RPVDKVIEALRS--SEILEVSADGENVKRRVPLDLTAARNA-RIEQNQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNK-----KFNGTVLVEFKTIPECEAFLKSYSNDDESNEIL 202          
The following BLAST results are available for this feature:
BLAST of DN617942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LA_AEDAL3.545e-4544.33La protein homolog OS=Aedes albopictus PE=1 SV=1[more]
LA_DROME1.180e-4040.20La protein homolog OS=Drosophila melanogaster GN=L... [more]
LA_HUMAN1.763e-3641.18Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2[more]
LA_MOUSE5.130e-3641.18Lupus La protein homolog OS=Mus musculus GN=Ssb PE... [more]
LAB_XENLA1.143e-3541.14Lupus La protein homolog B OS=Xenopus laevis GN=ss... [more]
LA_RAT1.493e-3540.64Lupus La protein homolog OS=Rattus norvegicus GN=S... [more]
LA_BOVIN1.493e-3540.11Lupus La protein homolog OS=Bos taurus GN=SSB PE=2... [more]
LAA_XENLA1.493e-3539.25Lupus La protein homolog A OS=Xenopus laevis GN=ss... [more]
LAH1_SCHPO1.006e-1533.70La protein homolog OS=Schizosaccharomyces pombe GN... [more]
LAH1_YEAST2.319e-1229.21La protein homolog OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01O09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617942 ID=DN617942; Name=DN617942; organism=Citrus sinensis; type=EST; length=761bp
AATTTTGTGAGGTTGATATATAGTGCCAGCTGAAATTGTGCAGTTTTTCT
GAAATTATTTCAGTGTAGTTTAAAATACACAGAACGCAAGTCCATCATTT
TCAATATAAATTGTAATTCGAAAGAAAATACGTACGCTCTGTAATACAGG
TGTTTCAATATTTGATCGAAAAAACCCGGAGAGAATGCCGGAAATGGCGG
AAACCGAATCGTCAAGTAACTGTTCTCTGTTAGACATGAACATTGTCGAA
CAAATCGAGTATTATTTCGGTGACTTCAATTTGTTGAAAGATAAGTTTCT
CAGAAACGAGATGACGAAAGATGAAGGGTGGGTTTCCATCTCCACATTGC
TACGGTTCAACAGATTGGCTGCACTAACGAAAGATGTTGATGTCATTATG
TCTGCCTTCAAGAAAAATCCCAGTTCCCTCGTTGAACTGAACGAAGACAG
AAAATGCGTCCGAAGACATCCGGATAGGGCCGTACCGGCGCACGATGAAA
CGTGGCGTAGCACAGTAGCCGATCGTTCTATATACGTAAAAGGTTTTCCT
CTTGAAACAGCAACTATGGATGATATTTTAAAATTCATGTCAACTTTTGG
AAAGATAGACAACGTGTTTAAACGGTCTTATTTCGATAAAGCTTTAAAAC
AATGGAAGTTCAAAGGTTCAATTTTTGTTGCCTTCCCCACGAAAGAAGAT
GCGGAAAAGTTCATGTCTATAGGTTCAGTAAAATACAATGGTAACGAACT
CATTCGAAAAT
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