DN617942
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_AEDAL (La protein homolog OS=Aedes albopictus PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.545e-45 Identity = 90/203 (44.33%), Postives = 131/203 (64.53%), Query Frame = 2 Query: 164 DRKNPERMPEMAET---ESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGF-PLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELIRK 760 + + PE E E E+S N S L+ + + Q+EYYFGD NL +DKFL+ +++KDEGWV + LL F RL +L++D VI+ A +K+ L+E++EDR+ +RRHP+R +P +E R + R++YVKGF P E M ++L+F F KI N+ R Y DKA K++ FKGS+FV F TK+ +F+ + Y G ELIRK Sbjct: 18 EEEAPETTAEQTEESAQETSENVSKLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDAIEKSDEGLIEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEEGTQMSELLEFFEPFEKITNIVMRKYHDKATKKYLFKGSVFVTFATKDHCAEFLKKEKLGYKGKELIRK 220
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_DROME (La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 1.180e-40 Identity = 82/204 (40.20%), Postives = 132/204 (64.71%), Query Frame = 2 Query: 158 IFDRKNPE--RMPEMAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDE-GWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELIRK 760 + + KN + + P A E++ + + I+ Q+EYYFGD NL +DKFLR ++ K+E GWV +S L+ F RLA+L+ D+ I++A K+ LVE++ED+ +RRHP+R +P H+E R + +R+ Y KGFPL+ + + ++L F + + K+ N+ R ++DK K +KFKGSIF+ F TK+ A+ F+ + Y EL+RK Sbjct: 24 VLEAKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLD-SQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRK 226
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_HUMAN (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 1.763e-36 Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 2 Query: 194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 MAE + + L+ I QIEYYFGDFNL +DKFL+ ++ DEGWV + +++FNRL LT D +VI+ A K+ + L+E++ED+ +RR P + +P + +++ V +RS+Y+KGFP + AT+DDI +++ G++ N+ R KA FKGSIFV F + E A+KF+ KY +L+ Sbjct: 1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHKA-----FKGSIFVVFDSIESAKKFVETPGQKYKETDLL 181
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_MOUSE (Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.130e-36 Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 MAE + + L+ I QIEYYFGDFNL +DKFL+ ++ DEGWV + T+++FNRL LT D +VI+ A K+ + L+E++ D+ +RR P R +P + +++ V +RS+Y+KGFP + AT+DDI +++ G+I N+ R K FKGSIF F + + A+KF+ I KY L+ Sbjct: 1 MAENGDNEKMTALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLDDKGQILNIQMRRTLHKT-----FKGSIFAVFDSIQSAKKFVEIPGQKYKDTNLL 181
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAB_XENLA (Lupus La protein homolog B OS=Xenopus laevis GN=ssb-B PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.143e-35 Identity = 72/175 (41.14%), Postives = 119/175 (68.00%), Query Frame = 2 Query: 230 LDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 LD I EQIEYYFGD NL +DKFL+ ++ D GWV + T+++FNRL+ LT D ++I+ A KK+ + L+E+NE++ +RR P + +P +E ++++ RS+Y+KGFP T +D+I ++++ G I+N+ R Q +FKGS+F+ F T++ A+KF+ ++KY N++I Sbjct: 12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQALKKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTIT-NLDEIKEWLNDKGPIENIQMRRTL-----QREFKGSVFLVFNTEDGAKKFLEDKNLKYKDNDMI 180
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_RAT (Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35 Identity = 76/187 (40.64%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 MAE + + L+ I QIEYYFGDFNL +DKFL+ ++ DEGWV + T+++FNRL LT D +VI+ A K+ ++L+E++ D+ +RR P R +P + +++ V +RS+Y+KGFP + AT+DDI +++ G+I N+ R K FKGSIF F + + A+KF+ KY L+ Sbjct: 1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLDDKGQILNIQMRRTLHKT-----FKGSIFAVFDSIQSAKKFVDTPGQKYKDTNLL 181
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LA_BOVIN (Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35 Identity = 75/187 (40.11%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 MAE + + L+ I QIEYYFGDFNL +DKFL+ ++ DEGWV + +++FNRL LT D +VI+ A K+ + L+E++ED+ +RR P + +P + +++ V +RS+Y+KGFP + A +DDI +++ G++ N+ R KA FKGSIF F + E A+KF+ KY +L+ Sbjct: 1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-AALDDIKEWLEDKGQVLNIQMRRTLHKA-----FKGSIFAVFDSIESAKKFVETPGQKYKDTDLL 181
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAA_XENLA (Lupus La protein homolog A OS=Xenopus laevis GN=ssb-A PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35 Identity = 73/186 (39.25%), Postives = 121/186 (65.05%), Query Frame = 2 Query: 194 MAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILKFMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNEL 751 MAE D I EQIEYYFGD NL +DKFL+ ++ D+GWV + T+++FNRL+ LT D + I+ A KK+ + L+E+NE++ +RR P + +P ++ +++++ +S+Y+KGFP +A +DD+ +++ G I+N+ R Q +FKGSIF+ F T +DA+KF+ ++KY N++ Sbjct: 1 MAENGDKEQKLDSDTKICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKKSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYIKGFP-TSAILDDVKEWLKDKGPIENIQMRRTL-----QREFKGSIFIIFNTDDDAKKFLENRNLKYKDNDM 180
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAH1_SCHPO (La protein homolog OS=Schizosaccharomyces pombe GN=sla1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 179 ERMPEMAETESSSNCSLLDMNIVEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETATMDDILK--FMSTFGKIDNVFKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFM 715 E E E + + S + +++Q+E+YF D NL DKFL K++GWV I T+ F R+ + ++ I++A +K+P L+E++E + VR R +P +V +RS+Y KGF E L+ F G I V R DK KFKGS+FV F + A KF+ Sbjct: 46 EETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSP-ELLEVDEAGEKVR----RMIPL-VRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPISAVRMRRDDDK-----KFKGSVFVEFKEPDVANKFL 214
BLAST of DN617942 vs. ExPASy Swiss-Prot
Match: LAH1_YEAST (La protein homolog OS=Saccharomyces cerevisiae GN=LAH1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12 Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 2 Query: 245 VEQIEYYFGDFNLLKDKFLRNEMTKDEGWVSISTLLRFNRLAALTKDVDVIMSAFKKNPSSLVELNEDRKCVRRHPDRAVPAHDETWRSTVADRSIYVKGFPLETA-------TMDDILKFMSTFGKIDNV-FKRSYFDKALKQWKFKGSIFVAFPTKEDAEKFMSIGSVKYNGNELI 754 ++Q+E+YF +FN D+FLR K++GWV IST+ FNR+ + VD ++ A + S ++E++ D + V+R + A R R++ V FP E +++ F G+I+ V +R + +K KF G++ V F T + E F+ S NE++ Sbjct: 34 LKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKY-RPVDKVIEALRS--SEILEVSADGENVKRRVPLDLTAARNA-RIEQNQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNK-----KFNGTVLVEFKTIPECEAFLKSYSNDDESNEIL 202 The following BLAST results are available for this feature:
BLAST of DN617942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617942 ID=DN617942; Name=DN617942; organism=Citrus sinensis; type=EST; length=761bpback to top |