DN617925

Overview
NameDN617925
Unique NameDN617925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:91..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.011e-65
Identity = 112/130 (86.15%), Postives = 122/130 (93.85%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVLI+NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQ+T SDGRT+ SN+V P NW
Sbjct:  113 LSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.218e-61
Identity = 106/129 (82.17%), Postives = 114/129 (88.37%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVL+TNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQ+  SDGRTVTSNNVVP  W
Sbjct:  112 LPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.077e-61
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  107 LPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.077e-61
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  107 LPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.918e-60
Identity = 100/129 (77.52%), Postives = 117/129 (90.70%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF++T SDGRTV S N  P  W
Sbjct:  109 LANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.657e-59
Identity = 97/129 (75.19%), Postives = 115/129 (89.15%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF++T SDG+T+ SNNV    W
Sbjct:  110 LPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 102/130 (78.46%), Postives = 119/130 (91.54%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQ+T SDGRTV S +VVP +W
Sbjct:  115 LANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 94/129 (72.87%), Postives = 117/129 (90.70%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF++TASDGRTV SNN+ P +W
Sbjct:  113 LPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.460e-54
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = -3
Query:  270 SNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 653
            +N+ GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVLITNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF++T SDGRTV SNN  P NW
Sbjct:  113 ANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.480e-54
Identity = 91/127 (71.65%), Postives = 110/127 (86.61%), Query Frame = -3
Query:  270 NDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 650
            +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  118 SDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
The following BLAST results are available for this feature:
BLAST of DN617925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPA8_ARATH9.011e-6586.15Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ORYSJ1.218e-6182.17Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ2.077e-6182.17Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.077e-6182.17Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP10_ARATH3.918e-6077.52Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH5.657e-5975.19Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA2_ARATH2.150e-5878.46Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP15_ARATH2.150e-5872.87Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP14_ARATH2.460e-5471.88Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ARATH5.480e-5471.65Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617925 ID=DN617925; Name=DN617925; organism=Citrus sinensis; type=EST; length=658bp
TTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACT
ATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAAC
AGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCAC
CTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATT
AAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCT
CAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTC
ACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTT
AAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTT
GCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCT
CCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGAC
GGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAA
TTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCA
GCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTT
AGACAGGG
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