DN617921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.042e-27 Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 MFPNMFPL +GQFGALPVMP+QAMTQQATRHARRVYVGGLP ANEQSVATFFS VM+AIGGNTAG Sbjct: 207 MFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAG 272
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27 Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 Query: 427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 +F NMFPL + QFGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAG Sbjct: 189 LFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAG 254
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26 Identity = 64/102 (62.75%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 322 ISGFDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 +SGFDM MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAG Sbjct: 171 VSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAG 272
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26 Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1 Query: 427 MFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 MF NMFP+V GQ GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAG Sbjct: 222 MFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 288
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23 Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1 Query: 427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 MFPNM P+ GQF L + P QAMTQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAG Sbjct: 183 MFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAG 247
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21 Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 1 Query: 427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 MFPNM P GQ L + P QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAG Sbjct: 176 MFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAG 240
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19 Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624 M PNMF L F L + P QAMTQQATRHARRVYVGGLPPTANE +VA +F+QVMAA+GGNTAG Sbjct: 207 MLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAG 271
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1 Query: 427 MFPNMFP-LVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 618 MFPNM P LV P+ AMTQQATRHARRVYVGGLPP ANEQ+VA FF+QVMAAIGGNT Sbjct: 243 MFPNMLPNLVNVPALGQPL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNT 303 The following BLAST results are available for this feature:
BLAST of DN617921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617921 ID=DN617921; Name=DN617921; organism=Citrus sinensis; type=EST; length=625bpback to top |