DN617921

Overview
NameDN617921
Unique NameDN617921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5758 contig Csv1_Contig5758:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.042e-27
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            MFPNMFPL +GQFGALPVMP+QAMTQQATRHARRVYVGGLP  ANEQSVATFFS VM+AIGGNTAG
Sbjct:  207 MFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAG 272          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            +F NMFPL + QFGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAG
Sbjct:  189 LFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAG 254          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 64/102 (62.75%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  322 ISGFDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            +SGFDM                             MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAG
Sbjct:  171 VSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAG 272          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1
Query:  427 MFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            MF NMFP+V GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAG
Sbjct:  222 MFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 288          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1
Query:  427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            MFPNM P+  GQF  L + P QAMTQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAG
Sbjct:  183 MFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAG 247          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            MFPNM P   GQ   L + P QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAG
Sbjct:  176 MFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAG 240          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  427 MFPNMFPLVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG 624
            M PNMF L    F  L + P QAMTQQATRHARRVYVGGLPPTANE +VA +F+QVMAA+GGNTAG
Sbjct:  207 MLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAG 271          
BLAST of DN617921 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  427 MFPNMFP-LVTGQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 618
            MFPNM P LV       P+    AMTQQATRHARRVYVGGLPP ANEQ+VA FF+QVMAAIGGNT
Sbjct:  243 MFPNMLPNLVNVPALGQPL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNT 303          
The following BLAST results are available for this feature:
BLAST of DN617921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
U2A2B_NICPL1.042e-2789.39Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_NICPL6.754e-2787.88Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2A_ARATH1.505e-2662.75Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_ARATH1.965e-2688.06Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_ORYSJ7.728e-2380.30Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2B_WHEAT1.903e-2177.27Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2A_ORYSJ1.781e-1972.73Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT4.107e-1672.31Splicing factor U2af large subunit A OS=Triticum a... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617921 ID=DN617921; Name=DN617921; organism=Citrus sinensis; type=EST; length=625bp
GAGAAAAGCAGGGACACGGACAGGGAGAAAAGCAGGGACATGGACAGGGA
GAAAAGCAGGGACAGGGACAGGGATAGGGAAAAGGACAGAGAAAAAGATC
GCCATCATAGAGATCGCCATAGGGAACGTAGTCGGGAACGCAGTGAGAGG
AGGAGAGATAGGGATGACGATGATCACTACCGAAGCCGAGACTATGATAG
AAGGAAAGATTATGATAGAGACAGAGAGGACAGGCACAAGCGGCGTTCTC
GATCTCGTTCAATAGGTAGATCTGAGCACAGATCTAGGTCACGTTCTCGT
TCACGGTCGAAGAGCAAGAGGATAAGTGGATTTGACATGGCACCCCCTGC
TTCTGCAATGCTAGCTGCTGGTGCTGGTGCTGCAGCTGCAGGTCAAATTC
CTGGGGCTAATCCGGCAATCCCTGGAATGTTTCCGAACATGTTTCCTTTG
GTGACTGGTCAGTTTGGTGCTCTTCCTGTTATGCCAGTTCAGGCAATGAC
TCAGCAGGCTACTAGGCATGCCCGCCGTGTCTATGTTGGAGGACTCCCCC
CTACAGCAAATGAACAGTCTGTAGCAACTTTCTTTAGCCAGGTTATGGCA
GCAATTGGAGGAAACACAGCTGGTC
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