DN617920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 186.808 bits (473), Expect = 5.342e-47 Identity = 83/103 (80.58%), Postives = 100/103 (97.09%), Query Frame = -2 Query: 215 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 523 P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43 Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = -2 Query: 215 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 526 +P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA DY+ Sbjct: 437 LPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43 Identity = 78/103 (75.73%), Postives = 95/103 (92.23%), Query Frame = -2 Query: 212 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 520 +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR +NGRKFGGNQVVAVFYPENKF +GDY+G Sbjct: 471 TKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.982e-43 Identity = 77/102 (75.49%), Postives = 94/102 (92.16%), Query Frame = -2 Query: 215 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 520 +KV+CLT+VV+ DEL DD++Y++ILEDMR E KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE Sbjct: 453 TKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 3.033e-42 Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = -2 Query: 215 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 526 +P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+ +Y+ Sbjct: 444 LPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 3.962e-42 Identity = 78/103 (75.73%), Postives = 92/103 (89.32%), Query Frame = -2 Query: 218 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 526 V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY Sbjct: 469 VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 3.139e-39 Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = -2 Query: 212 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 526 +P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P GVG+VFLE+AD++ +TKA+ GM+GRKF NQVVAVFYPE+KFA+G Y+G Sbjct: 470 LPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18 Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = -2 Query: 233 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKF 520 ++++CL +V+ DELK D+EYEEILED+R E K+G + ++ IPRP + P PGVGKVF+E+A +A+ + GRKF VV +Y +K+ Sbjct: 397 TEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYED-HPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18 Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = -2 Query: 233 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKF 520 ++++CL +V+ DEL+ DE+YEEILED+R+E K+G + ++ IPRP + P PGVGKVF+E+A +A+ + GRKF VV +Y +K+ Sbjct: 388 TEILCLMNMVTEDELRSDEDYEEILEDVREECSKYGIVRSLEIPRPY-DDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 482
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17 Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = -2 Query: 218 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 523 P++V+CL +V+ DEL+D+EEYE+ILED+++E K+G + +V IPRP G PG GKVF+E+ + KA+ + GRKF VV ++ +K+ + ++ Sbjct: 316 PTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRP-IEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRREF 416 The following BLAST results are available for this feature:
BLAST of DN617920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617920 ID=DN617920; Name=DN617920; organism=Citrus sinensis; type=EST; length=527bpback to top |