DN617920

Overview
NameDN617920
Unique NameDN617920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11723 contig Csv1_Contig11723:1014..1540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 5.342e-47
Identity = 83/103 (80.58%), Postives = 100/103 (97.09%), Query Frame = -2
Query:  215 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 523
            P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE
Sbjct:  486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = -2
Query:  215 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 526
            +P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP  GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA  DY+
Sbjct:  437 LPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43
Identity = 78/103 (75.73%), Postives = 95/103 (92.23%), Query Frame = -2
Query:  212 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 520
            +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR  +NGRKFGGNQVVAVFYPENKF +GDY+G
Sbjct:  471 TKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.982e-43
Identity = 77/102 (75.49%), Postives = 94/102 (92.16%), Query Frame = -2
Query:  215 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 520
            +KV+CLT+VV+ DEL DD++Y++ILEDMR E  KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE
Sbjct:  453 TKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.033e-42
Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = -2
Query:  215 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 526
            +P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P  GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+  +Y+
Sbjct:  444 LPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.962e-42
Identity = 78/103 (75.73%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  218 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 526
            V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP  G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY
Sbjct:  469 VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.139e-39
Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = -2
Query:  212 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 526
            +P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P  GVG+VFLE+AD++ +TKA+ GM+GRKF  NQVVAVFYPE+KFA+G Y+G
Sbjct:  470 LPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = -2
Query:  233 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKF 520
            ++++CL  +V+ DELK D+EYEEILED+R E  K+G + ++ IPRP  +  P PGVGKVF+E+A      +A+  + GRKF    VV  +Y  +K+
Sbjct:  397 TEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYED-HPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  233 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKF 520
            ++++CL  +V+ DEL+ DE+YEEILED+R+E  K+G + ++ IPRP  +  P PGVGKVF+E+A      +A+  + GRKF    VV  +Y  +K+
Sbjct:  388 TEILCLMNMVTEDELRSDEDYEEILEDVREECSKYGIVRSLEIPRPY-DDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 482          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = -2
Query:  218 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 523
            P++V+CL  +V+ DEL+D+EEYE+ILED+++E  K+G + +V IPRP   G   PG GKVF+E+  +    KA+  + GRKF    VV  ++  +K+ + ++
Sbjct:  316 PTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRP-IEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRREF 416          
The following BLAST results are available for this feature:
BLAST of DN617920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
U2A2B_ARATH5.342e-4780.58Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_WHEAT3.583e-4376.92Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_NICPL6.112e-4375.73Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_NICPL7.982e-4375.49Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_ORYSJ3.033e-4275.00Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ARATH3.962e-4275.73Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2A_ORYSJ3.139e-3967.62Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2AF2_CAEEL6.805e-1844.79Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
U2AF2_CAEBR6.805e-1843.75Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
U2AF2_DROME4.411e-1741.18Splicing factor U2AF 50 kDa subunit OS=Drosophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617920 ID=DN617920; Name=DN617920; organism=Citrus sinensis; type=EST; length=527bp
ACACCAATAGATTATAGAACAGGGTCATCCATTATAGTTCGGAAACAGAA
TTATATTCATTATGACCTCTGAGAAAAAAGAATTAATTAAGAACTAAAAA
CCCAACACTGCAAGCTCTCCTCGAGAACATCACTGTACCCTAAAGCTAGA
TCTATTTGATAGAACATCAGGGGAGAGAATTCCACAAGTAATGCTAGAAA
AACAACTATTAGCCTTCATAATCCCCCTGGGCAAATTTGTTCTCTGGATA
AAATACAGCAACAACTTGATTTCCACCAAATTTTCTTCCGTTCATCCCTG
TTCGAGCTTTTGTAGCACCATCAATATCTGCATATTCTAAGAACACCTTC
CCAACTCCTGGTGATGGCTCGCCATTGGGATTTGGGCGCGGGATGATAAC
ATTCACCAATGTACCGAATTTTCCGCCTTCTTGTCTCATATCTTCCAAAA
TTTCTTCATACTCTTCATCATCTTTAAGCTCATCTGCAGAAACTACTTGA
GTTAAGCACACAACCTTCGAAGGAACT
back to top