DN617917

Overview
NameDN617917
Unique NameDN617917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617917_ssr22 microsatellite DN617917_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3991 contig Csv1_Contig3991:176..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617917 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:   73 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 372
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100
[Close]
BLAST of DN617917 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:   73 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 372
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100
[Close]
BLAST of DN617917 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   73 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 372
            MSR PEV WAQR DKV++TV LPDAK+  V  EP+G+FSFSA  GA+   +E  LEL+ K+  E  K NVG+R+I   ++K E+ WW +LL+ + K   Y
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKIMTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98
The following BLAST results are available for this feature:
BLAST of DN617917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ2.562e-3980.00Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI2.562e-3980.00Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH3.146e-2151.00Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617917 ID=DN617917; Name=DN617917; organism=Citrus sinensis; type=EST; length=705bp
CAAAACCGCAGGCTGTCGCAACTCTCTCTCTCGCTCTAGGGTTTTACTGT
TTTCTTTCCATTTCGAGACAATATGAGCCGTGTTCCTGAGGTGAAGTGGG
CCCAGAGGCAAGATAAGGTATTTATAACCGTGCAATTACCTGACGCAAAA
AATGCCAAGGTAAATCTTGAGCCAGAGGGAGTGTTCTCCTTCTCTGCTAG
TGCTGGTGCTGAAAACCACCTTTATGAGCTCAAGCTGGAGCTTTTTGATA
AGGTCAACGTGGAGGAAAGCAAAATTAATGTAGGTGTAAGGAGCATATTC
TGCATCGTGGAGAAGGCAGAAAAAGGATGGTGGAAGAAACTACTTCGTGG
AGATGGCAAGACACCACATTATGTCAAAGTTGATTGGGACAAATGGGTAG
ACGAAGACGAGGATAATGGTGCAGGTGACTTGGATCTTGGGGGGATGGAC
TTTTCGAATTTTGGTGGCATGGGAGGTGATGATGGTATGGGTGGCTTTGA
AGACAGTGATGATGAAGAAGTGTCAAAGCCGCAACAAGAAGTTCGCAAGG
CAGGAGATACTAATCAAGAAGAGGAAGGTGAGGACAAGAGTGATGCTGGC
ATTACTGAAGGGAAAACAGAAGCTGCTCAAAGCACATAATATTGTGGTTG
TTCCAAATGCCAAGTTCGCTCGAGCTATAGTTTCAGGATGGGATAAATCT
TTTCA
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