DN617913

Overview
NameDN617913
Unique NameDN617913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5757 contig Csv1_Contig5757:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617913 vs. ExPASy Swiss-Prot
Match: COG7_BOVIN (Conserved oligomeric Golgi complex subunit 7 OS=Bos taurus GN=COG7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 57/202 (28.22%), Postives = 105/202 (51.98%), Query Frame = 1
Query:   55 LDLGPFSDEKFDPKKWINSACQTRHSQDSL---DNHLVDLEMKLQMVXXXXXXXXXXXXXXXXXRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIXKQLEVLEDRLDAMVQPRLTDALSNRKID 651
            +D   F  E FD K+WIN+A +    + +    D+H   L MKLQ+                   +P+  RDV  L+ +A  L+  +  + + +KK E  +++S+  L ++D VK RM+ A E+LQ+A   + LS  +E+ F + D+   +  L  M++ L  + +  +++     LE L++RL+A+  P++  A +++ ID
Sbjct:    1 MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSID 202          
BLAST of DN617913 vs. ExPASy Swiss-Prot
Match: COG7_HUMAN (Conserved oligomeric Golgi complex subunit 7 OS=Homo sapiens GN=COG7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 55/202 (27.23%), Postives = 104/202 (51.49%), Query Frame = 1
Query:   55 LDLGPFSDEKFDPKKWINSACQTRHSQDS---LDNHLVDLEMKLQMVXXXXXXXXXXXXXXXXXRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIXKQLEVLEDRLDAMVQPRLTDALSNRKID 651
            +D   F  + FD K+WIN+A +    + +    D H   L MKLQ+                   +P+  RDV  L+ +A  L+  +  + + +KK E  +++S+  L ++D VK RM+ A E+LQ+A   + LS  +E+ F + D+   +  L  M++ L  + +  +++     LE L++RL+A+  P++  A +++ +D
Sbjct:    1 MDFSKFLADDFDVKEWINAAFRAGSKEAASGKADGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQAVD 202          
BLAST of DN617913 vs. ExPASy Swiss-Prot
Match: COG7_MOUSE (Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus GN=Cog7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.341e-19
Identity = 55/202 (27.23%), Postives = 102/202 (50.50%), Query Frame = 1
Query:   55 LDLGPFSDEKFDPKKWINSACQTRHSQDSL---DNHLVDLEMKLQMVXXXXXXXXXXXXXXXXXRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIXKQLEVLEDRLDAMVQPRLTDALSNRKID 651
            +D   F  + FD K WIN+A +      +    D H   L MKLQ+                   +P+  RDV  L+ +A  L+  +  + + +KK E  +++S+  L ++D VK RM+ A E+LQ+A   + LS  +E+ F + D+   +  L  M++ L  + +  +++     LE L++RL+A+  P++  A +++ +D
Sbjct:    1 MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKLQLFIQEVNHAVEETSLQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSVD 202          
BLAST of DN617913 vs. ExPASy Swiss-Prot
Match: COG7_RAT (Conserved oligomeric Golgi complex subunit 7 OS=Rattus norvegicus GN=Cog7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 55/202 (27.23%), Postives = 101/202 (50.00%), Query Frame = 1
Query:   55 LDLGPFSDEKFDPKKWINSACQTRHSQDSL---DNHLVDLEMKLQMVXXXXXXXXXXXXXXXXXRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIXKQLEVLEDRLDAMVQPRLTDALSNRKID 651
            +D   F  + FD K WIN+A +      +    D H   L MKLQ+                   +P+  RDV  L+ +A  L+  +  + + +KK E  +++S+  L ++D VK RM+ A E+LQ+A   + LS  +E+ F + D+   +  L  M+  L  + +  +++     LE L++RL+A+  P++  A +++ +D
Sbjct:    1 MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKLQLFIQEVNHAVEETSLQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQSSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSVD 202          
BLAST of DN617913 vs. ExPASy Swiss-Prot
Match: COG7_DICDI (Conserved oligomeric Golgi complex subunit 7 OS=Dictyostelium discoideum GN=cog7 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 56/221 (25.34%), Postives = 104/221 (47.06%), Query Frame = 1
Query:   70 FSDEKFDPKKWIN-----------SACQTRHSQDSL----DNHLVDLEM---------KLQMVXXXXXXXXXXXXXXXXXRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAES---IAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIXKQLEVLEDRLDAMVQPRLTDALSNRKID 651
            FS   F+ K WIN           S+   + +Q S+    +N   +LE+         KLQ+                   VP++ R+V R+R +++ L+  +  I  K+ +    S +S   ++ + K+D VK RME +  +L++A  L   S TV+ +F+S D    ++ L  ++  LS + +V EF    K+  V +DRL++ ++  L  +L  + ++
Sbjct:   10 FSSNDFNSKTWINNLLSDCGGSGSSSGNAKSNQQSILTDQNNIKAELEIENICSNYLSKLQLYQIELNISLESITSESLLIVPKSIREVDRIRKESLHLKNRIKSISSKIGEMNNDSPQSMETVSVIEKLDQVKSRMEISIRSLKEAEKLLSFSKTVDQLFSSNDYLMISDKLEEVKQSLSVLSDVPEFREQSKKFNVYQDRLESQLKQPLQQSLQQKDLE 230          
The following BLAST results are available for this feature:
BLAST of DN617913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COG7_BOVIN3.947e-2028.22Conserved oligomeric Golgi complex subunit 7 OS=Bo... [more]
COG7_HUMAN1.500e-1927.23Conserved oligomeric Golgi complex subunit 7 OS=Ho... [more]
COG7_MOUSE3.341e-1927.23Conserved oligomeric Golgi complex subunit 7 OS=Mu... [more]
COG7_RAT5.699e-1927.23Conserved oligomeric Golgi complex subunit 7 OS=Ra... [more]
COG7_DICDI6.521e-1525.34Conserved oligomeric Golgi complex subunit 7 OS=Di... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617913 ID=DN617913; Name=DN617913; organism=Citrus sinensis; type=EST; length=658bp
CTAACTTGCTCGAGTCATCTCGCTGGATCCAAGCTAAACTCGGAAGCCAT
GATGCTGGATCTAGGTCCGTTCTCGGACGAGAAATTCGACCCGAAGAAAT
GGATCAATTCGGCGTGTCAGACTCGGCACTCACAGGATTCACTCGACAAT
CACTTGGTGGATCTCGAAATGAAGCTCCAAATGGTTTCCGAAGAAATCTC
CGCGTCTCTCGAGGAGCAGAGCGCTTCCGCTCTCCTCCGCGTCCCTCGCG
CCACTAGAGACGTTGTTCGTCTCCGCGATGACGCCATTTCCCTCCGCGGT
TCTGTCTCCGGAATCCTGCAGAAGCTCAAGAAGGCAGAAGGATCTTCAGC
GGAGTCTATAGCAGCCTTATCTAAAGTTGATACTGTCAAGCAAAGAATGG
AAGCTGCTTATGAGACATTGCAGGATGCTGCTGGGTTAACTCAATTAAGT
TTGACTGTGGAGGATGTGTTTGCCAGTGGTGATCTTCCTCGTGCTGCTGA
AACCTTGGCCAATATGAGGCATTGTTTGTCTGCTGTCGGTGAGGTTGCTG
AATTTGCAAACATTANGAAGCAACTTGAGGTCTTAGAGGATAGATTAGAT
GCAATGGTGCAGCCTCGTCTCACAGATGCATTATCTAATCGCAAGATTGA
TATTGCTA
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