DN617912

Overview
NameDN617912
Unique NameDN617912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5841 contig Csv1_Contig5841:18..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617912 vs. ExPASy Swiss-Prot
Match: COG7_DROME (Conserved oligomeric Golgi complex subunit 7 OS=Drosophila melanogaster GN=Cog7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = -3 
Query:  182 SAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGIST---------SDNNDEAQFFAAEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSVPIPPALATFHTCLSTPRDQLKDQLKSDSGNQLDLPTA 589
            S   +P+FS  PQ  +T +G+YLLTLPQ LEPL    S+         +    +A   A   +  V E    LY+ Q+  I+ +    A QLSVDIEYLSNVL  L + I   L+   T L    DQ    L   SG +  L TA
Sbjct:  590 SGIEMPSFSFAPQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADVLLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSINLQLSQILTLLKAAPDQ---YLTLSSGCEPRLVTA 731
The following BLAST results are available for this feature:
BLAST of DN617912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COG7_DROME1.986e-1237.93Conserved oligomeric Golgi complex subunit 7 OS=Dr... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617912 ID=DN617912; Name=DN617912; organism=Citrus sinensis; type=EST; length=606bp
GGGGACAAATAAATTGGTAATATCATATAGTTGGATATGCCGCAGATAAC
AAATTCTGATAAGAAATAACAACATAGATTAATCAATAACCAAAAGCTAC
ACTTTTGACAAAATATTAATTCTAATATCAAAAATTTTGTTCCTAATCTA
AACTCACACGCCGAATCTTACATACAAGGTTTGCTGTCGGAAGATCAAGC
TGATTTCCTGAATCAGACTTCAATTGATCCTTAAGCTGATCTCTTGGAGT
TGAAAGGCATGTGTGAAATGTGGCAAGAGCTGGAGGAATTGGCACCGATA
GGGCAGAGAGCACATTACTCAAGTACTCGATATCTACTGAAAGTTGTTGT
GCTCCGTGATCTGTTATGTACTGAATGCCCCTCAACTGCTCCATGTAAAG
AGCAGAGGCACCCTCAGCAACCTTGAACATCCATTCAGCTGCAAAAAACT
GGGCTTCATCATTGTTATCACTGGTAGAGATGCCCTCAGCTAGTGGCTCC
AATTGTTGGGGTAAAGTAAGCAAATATTCACCAACACTTGTTACATAGGT
TTGTGGGTATGCACTGAAGGTTGGAAGATGGAAAGCACTTTGTTCCTCTA
CTGACG
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