DN617911

Overview
NameDN617911
Unique NameDN617911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = -2
Query:  318 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASK 575
            LG+LR VPTEDA+EFA+RENLFFMETSALE+TNVE AF+TVLTEIYRI+SKK+L AN+E D +GNS+LLKGT+I+VPGQ+    +K
Sbjct:  135 LGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTK 220          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = -2
Query:  315 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR 563
            R VPTEDA+EFA++E LFF+ETSALEATNVE+AF TVLTEIY I++KKSL A DE    GNS  L G +II+PG  Q   +KR
Sbjct:  138 RDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAA-DESQGNGNSASLSGQKIIIPGPAQEIPAKR 219          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = -2
Query:  315 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR 563
            RAVPTEDA+EFAQ+E LFF+ETSA+EATN+E AFLTVLTEI+ I++KK+L A D++   GN   L G +I+VPG  Q    K+
Sbjct:  136 RAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAA-DDNQSNGNPASLTGKKILVPGPGQVIPEKK 217          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.784e-19
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = -2
Query:  315 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR 563
            RAVPTEDA+EFAQ+E LFF+ETSA+EAT +E AFLTVLTEI+ I++KK+L A DE+    N   L G +I+VPG  Q    K+
Sbjct:  136 RAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAA-DENQSNSNPASLTGKKILVPGPGQVIPGKK 217          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.322e-15
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  318 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASK 575
            L  LRAV TEDAQ +A++E L F+ETSALEA NVE AF T+L+E+YRIISKKS++++       N+N+ +G  I V    +++A K
Sbjct:  129 LKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD---QTTANANIKEGQTIDVAATSESNAKK 211          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  315 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR 575
            L  L AVPTED + FA+RE+L+FMETSALEATNVE AF  VLT+IYRI+SK+++ A D    +G+S+ L      +  ++ +S  KR
Sbjct:  130 LRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGD----SGSSSGLPSKGQTINVKEDSSVLKR 212          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  315 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKR 575
            L  LRAV TEDA+ FA+REN FFMETSALE+ NVE AF  VLTEIY+++ +K+L   D+      + L KG  I V G+D  SA K+
Sbjct:  131 LRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDD-----PAALPKGQTINV-GKDDVSAVKK 211          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  312 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRG 575
            L  L AVPTED + +A++E+L FMETSALEATNVE AF  VLT+IYRI SKK + A ++    GN+++ KG +I V   D ++  K G
Sbjct:  130 LRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGED----GNASVPKGEKIEVK-NDVSALKKLG 212          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  330 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQN 575
            L  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIYRI+S+K ++   E+D++ ++N++    I VP   +N
Sbjct:  128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVP---IHVPPTTEN 206          
BLAST of DN617911 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 40/82 (48.78%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  330 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQN 575
            L  LRAVPT++A+ FA++  L F+ETSAL++TNVE AF T+LTEIYRI+S+K ++   E+D++ ++N++    I VP   +N
Sbjct:  128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVP---IHVPPTTEN 206          
The following BLAST results are available for this feature:
BLAST of DN617911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RGP1_ORYSJ9.432e-3073.26Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA2.751e-2165.06Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC8.849e-2060.24Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC9.784e-1959.04Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAA2A_ARATH1.322e-1551.16Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11D_LOTJA5.025e-1551.72Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC1.909e-1454.02Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1B_ARATH1.909e-1452.27Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11A_RAT3.257e-1448.78Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT3.257e-1448.78Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617911 ID=DN617911; Name=DN617911; organism=Citrus sinensis; type=EST; length=579bp
ATTCTATATTCCTCCAGACAAACTAAAAATAGTAGCTTCCGTTTACAAAT
GCCTACCGTAGGAGAAAGGCTGTTCTCTAGCAATTAGGCTGGTAGAGCTA
GTCTAATACTCTTCATGATCAAACCAAAAAAAGGAAAAAAAAAATCAATA
ACTTAACAGATGTCTCATCCTGTCCTTCCAGCATCAATACACTCTTTTTA
CATGAATATACCCTCTTCTTAAAAAATAATAGATCCTAAATGAACAAAAT
TTCCCAAAAAGAGAATCAAGTGTCGAAAAAATGTGAAGCAAAATTACGAA
GAAAGGCAGCAGCCACGCTTGGATGCAGAATTCTGATCCTGGCCGGGAAC
AATAATTCTGGTACCTTTAAGAAGATTAGAGTTGCCTGCCACATCATGCT
CATCATTGGCAGTAAGGGATTTCTTGCTGATTATCCTATAAATCTCCGTT
AACACTGTTAAAAATGCAGTTTCAACATTGGTGGCCTCGAGAGCTGATGT
CTCCATAAAGAAAAGGTTTTCTCTTTGGGCAAACTCTTGGGCATCTTCCG
TTGGCACCGCACGAAGACTTCCAAGTCAC
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