DN617897

Overview
NameDN617897
Unique NameDN617897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:153..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.070e-59
Identity = 112/165 (67.88%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  128 WLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            W+TG+       LDF            DYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L DCVRNP FLDWEV EQL KVK+EISE S N
Sbjct:   41 WITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEISEYSKN 205          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.895e-55
Identity = 116/207 (56.04%), Postives = 134/207 (64.73%), Query Frame = 2
Query:    2 RNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            R AASR RALKG V  R                         WL+G        LD             D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L K+K EI+E++ N
Sbjct:    3 RTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMPLQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKVEIAELAKN 208          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.063e-52
Identity = 112/207 (54.11%), Postives = 130/207 (62.80%), Query Frame = 2
Query:    2 RNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            R AASR +ALKG     +                        WL+G        ++             D+VEP K K +TLPNG+ IA+E S +P ASI LYV CGSIYE+P   G THLLERMAF+ST NRSH R+VRE+EAIGGN  ASASREQMGY+ DALKTYVPEMVE+LID VRNP FLDWEVNE+L KVK EI E + N
Sbjct:    3 RTAASRAKALKG-----ILNHNFRASRYASSSAVATSSSSSSWLSGGYSSSLPSMNIPLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKVEIGEFATN 204          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 44/129 (34.11%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            +  I+TL NGV++ASE      + + +Y+  GS YE+    G +H+++R+AF+ST  R+   ++  VE +GGN+Q ++SRE M Y        +P  VEL+ + +R+P   D E+  Q+   + E++E+
Sbjct:   51 RDNITTLSNGVRVASEDLPDAFSGVGVYIDAGSRYENDYVRGASHIMDRLAFKSTSTRTADEMLETVEKLGGNIQCASSRESMMYQAATFNKAIPTAVELMAETIRDPKLTDEELEGQIMTAQYEVNEI 179          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 45/119 (37.82%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 583
            K +ISTLPNG+++ S+ +   V +I LY+  G+ YESP   G  +LLE+M F+ T+N S   I++E+E I  N  AS+SRE +  S + L+  +  ++ +L D +++P + + E+ EQ+
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCAIGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSEEELREQI 261          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N
Sbjct:   57 ETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETN 188          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N
Sbjct:   57 ETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETN 188          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N
Sbjct:   58 ETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETN 189          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  218 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 595
            +P   + + LPNG+ IAS  + SPV+ I L++  GS YE   + GTTHLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + L+  V  ++E L++    P F  WEV +   ++K
Sbjct:   34 QPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLK 159          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 44/128 (34.38%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 610
            +T++S L NG+++ASE S  P  ++ +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+N    D ++ ++   +  E+ E
Sbjct:   47 ETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREMQE 174          
The following BLAST results are available for this feature:
BLAST of DN617897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MPPA_SOLTU5.070e-5967.88Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH9.895e-5556.04Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH2.063e-5254.11Probable mitochondrial-processing peptidase subuni... [more]
MPPA_NEUCR3.007e-1934.11Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_DICDI3.927e-1937.82Mitochondrial-processing peptidase subunit alpha-1... [more]
MPPB_RAT7.407e-1834.85Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE7.407e-1834.85Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN7.407e-1834.85Mitochondrial-processing peptidase subunit beta OS... [more]
QCR2_HUMAN1.263e-1736.51Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_RAT2.815e-1734.38Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617897 ID=DN617897; Name=DN617897; organism=Citrus sinensis; type=EST; length=622bp
CAGAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTA
GGGTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACT
TCATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAG
TTCTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTT
CATTGCCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCA
AATGGTGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAAT
ATCGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTG
GGACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGG
AGTCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCA
AGCCTCAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAA
CTTATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCT
GTTTTTCTGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGA
GATTAGTGAGGTTTCCAACAAT
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