DN617877

Overview
NameDN617877
Unique NameDN617877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1154..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWISKGEYDESGPSIV RKCF
Sbjct:  344 GSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWISKGEYDESGPSIV RKCF
Sbjct:  345 GSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWISKGEYDESGPSIV RKCF
Sbjct:  345 GSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWISKGEYDESGPSIV RKCF
Sbjct:  349 GSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWI+KGEYDESGPSIV RKCF
Sbjct:  345 GSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617877 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2 
Query:  451 GSILASLSTFQQMWISKGEYDESGPSIVPRKCF 549
            GSILASLSTFQQMWI+KGEYDESGPSIV RKCF
Sbjct:  325 GSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
The following BLAST results are available for this feature:
BLAST of DN617877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ACT3_SOYBN3.050e-1196.97Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ3.050e-1196.97Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI3.050e-1196.97Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA3.050e-1196.97Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU6.795e-1193.94Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU6.795e-1193.94Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01M23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617877 ID=DN617877; Name=DN617877; organism=Citrus sinensis; type=EST; length=550bp
TATTTTAATAACCAAATTTATGACTGCGAGCTGACGCTAGTTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGGGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
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