CX045805

Overview
NameCX045805
Unique NameCX045805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 3.191e-72
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 406
            RGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    6 RGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.167e-72
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 406
            RGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    6 RGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.828e-66
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 406
            RGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:    6 RGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.322e-61
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CX045805 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.629e-61
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 2 
Query:    2 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 403
            RGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of CX045805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RL23_ARATH3.191e-7297.7860S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC4.167e-7297.7860S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU5.828e-6691.1160S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE4.322e-6185.0760S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT9.629e-6184.3360S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG9.629e-6184.3360S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE9.629e-6184.3360S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU9.629e-6184.3360S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN9.629e-6184.3360S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN9.629e-6184.3360S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_4B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-4B02-C4-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045805 ID=CX045805; Name=CX045805; organism=Citrus sinensis; type=EST; length=636bp
ACGCGGAGGATCAGCAGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAG
TGGCAGCAACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTAC
ATCATCTCAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGC
CTGTGTTGGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTGATC
TTAGGAAGAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGG
CGCAGAAAGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGTTAT
TGTGAATCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTG
GTAAAGAGTGTGCTGATTTGTGGCCGAGGATTGCAAGTGCAGCCAATGCT
ATCGTTTAAGACATTCAAGACCGATAACCTATATCATCCTTTTTGTTGCA
CTAAAAAGAATTCTGGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTTTTC
TGTGAACTTTCTGTATGATTTTGTTGTTCTAGTTTTGGAAGTGGTATGAA
AGTTTGGAGTTTTGTTGATCTTGATATCATTTTCATGCTGATTGTGTTTT
TGAATTCAACTTCCGATGCAATACGGTTGCAATTTT
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