DN617805

Overview
NameDN617805
Unique NameDN617805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:23..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.769e-54
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWITNEIIHNP+VN+RL  MAV  IPVE G+K F VV  GDVV+LPAFGA+V EM  LN+K   IVDTTCP
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFGASVSEMQILNDKGCMIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.893e-51
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+ +L +S+NY+R+GFGH+ E +  MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWITNEIIHNP+VN+RL EM V  I V  G K F VV  GDVV+LPAFGA+V EM  LN+K   IVDTTCP
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFGASVTEMQLLNDKGCTIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.457e-50
Identity = 91/157 (57.96%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+ +L  S+NY R+GFGHK+E   +M  EY S +I+++++N +E T G+V + LAE++GFCWGVERAV +AYE RK FP EKIW+TNEIIHNP+VN RL+EM V  I V +G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCP
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDFSGVANGDVVILPAFGATVQEMQLLNDRGCTIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 87/158 (55.06%), Postives = 123/158 (77.85%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+ +L +S+ Y+R+GFGH+EE   L+  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWITNEIIHNP+VNK L +M V+ IPV+ +G+K F VV + DVV+LPAFGA+V+EM  L++K   I+DTTCP
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDFTVVGQNDVVILPAFGASVQEMQLLHDKGCTIMDTTCP 159          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 88/157 (56.05%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K   IVDTTCP
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 88/157 (56.05%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K   IVDTTCP
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 85/157 (54.14%), Postives = 122/157 (77.71%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+ +L +S+NY+R+GFG ++E + +MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+TNE+IHNP+VN+RL +M V+ IPV E +K F VV + DVV+LPAFGA+V EM  LN+K   IVDTTCP
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFGASVTEMQLLNDKGCTIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.619e-49
Identity = 91/157 (57.96%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCP
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDFSGVESGDVVILPAFGATVQEMQLLNERGCHIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49
Identity = 88/157 (56.05%), Postives = 118/157 (75.16%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEIIHNP+VN+RL +MAV+ IPV  G K F  V  GDVV+LPAFGA+V+EM  LN +   IVDTTCP
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDFSGVRPGDVVILPAFGASVQEMQLLNERGCTIVDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.880e-49
Identity = 87/157 (55.41%), Postives = 116/157 (73.89%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  +IVDTTCP
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGCKIVDTTCP 158          
The following BLAST results are available for this feature:
BLAST of DN617805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ISPH_MICAN4.769e-5461.154-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA52.893e-5159.874-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP25.457e-5057.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM11.588e-4955.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP62.708e-4956.054-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE72.708e-4956.054-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP72.708e-4954.144-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR34.619e-4957.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB6.033e-4956.054-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT7.880e-4955.414-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617805 ID=DN617805; Name=DN617805; organism=Citrus sinensis; type=EST; length=706bp
CCACGCTGTCCGCCAACTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGA
ATCTCCCTCATCATGGCGACGACTCTGCAGTTCTGCCGTGTTTGCGCGCG
AACTGACATAGGTTCGCGCCATAATAATCGCTCCGGAGCGCTGGCTCCGC
CGCGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGACGAGC
TCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAA
CTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAG
AGACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAA
TTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCT
GGCCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTG
CTTATGAAGCAAGAAAACAGTTTCCCGAGGAGAAGATCTGGATTACCAAT
GAAATCATACACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGT
TCAAAATATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATA
AGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATG
GTGACTCTGAATAACAAGAATGTACAGATTGTTGATACAACTTGCCCCTT
GGGTGT
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