DN617802

Overview
NameDN617802
Unique NameDN617802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12113 contig Csv1_Contig12113:398..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = -2
Query:  155 MLVLSLGTGTAKKELK-YNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  +  K Y A +A+KWGI +W+     +P+ ++ S  SS + D+++S +FQ+  S++NYLR+Q++ LTG A + D A+  NM  LV+ G  LLK+ VS  N E           T E AL  FAKLLS++ KLR  +
Sbjct:  241 MLLLSLGTGTNSEFAKNYTAEEAAKWGILQWM-----SPLWEMRSAASSYMNDYYLSTVFQALDSQNNYLRVQENALTGTATTFDDASVANMILLVQVGENLLKKSVSEDNHE-----------TYEVALKRFAKLLSDRKKLRANK 371          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PT2K3_SOLTU (Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.004e-21
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   WI       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G KLLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWILA-----IQQMTNAASSYMTDYYLSTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGEKLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.236e-21
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A + +KWG   W+       I  + S  SS + D+++S  FQ+  S++NYLR+Q++ LTG    +D A+E NMQ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTTSEFDKTYTAEETAKWGTARWMLV-----IQKMTSAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PT2K2_SOLTU (Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWLLA-----IQQMTNAASSYMTDYYISTVFQAHHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATM2_SOLTU (Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATM1_SOLTU (Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A + +KWG  +W+       I  +    SS + D+++S +FQ+  S+ NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  254 MLLLSLGTGTTSEFDKTYTAEETAKWGAIQWMLV-----IQRMTDAASSYMTDYYLSTVFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 384          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A + +KWG  +W+       I  +    SS + D+++S +FQ+  S+ NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  254 MLLLSLGTGTTSEFDKTYTAEETAKWGAIQWMLV-----IQRMTDAASSYMTDYYLSTVFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 384          
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PAT15_SOLTU (Patatin-15 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +  SS + D+++S +FQ+  S++NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  253 MLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383          
The following BLAST results are available for this feature:
BLAST of DN617802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PT3K1_SOLTU7.686e-2242.86Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PT2K3_SOLTU1.004e-2142.18Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 ... [more]
PATT5_SOLTU2.236e-2142.18Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT2K2_SOLTU4.982e-2140.82Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 ... [more]
PATM3_SOLTU6.506e-2140.82Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1[more]
PATM2_SOLTU6.506e-2140.82Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1[more]
PATM1_SOLTU6.506e-2140.82Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU6.506e-2140.82Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PATD2_SOLTU6.506e-2140.82Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT15_SOLTU6.506e-2140.82Patatin-15 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01L09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617802 ID=DN617802; Name=DN617802; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTATTTTAATAGTAATAATCTTATTAATTCGTAGA
GTCCAATTGGAAGCACTTTGTATCGGATTGATTACACATAAAAACATGCA
TGCGGAATCCTTATGCCTTACTCAAATAAAACGAGTTTCAAATTAAAAGA
CTTATTGGCGGCAGCGGAGCTTAAGTTGTTCAGAGAGTAATTTGGCAAAG
TGAGCAAGTGCTTCTTCATTTGTGACCTCTCCGTCGACCTTCTCATATCT
GCCAGTCTCCAGGTTCACCCTCGACACCTGCTCCTTCAACAACTTGGTTC
CAGTTTCCACAAGCCTTTGCATATTCTCCTCCGTGGCAATGTCAACAGAT
GCTGCATCACCAGTCAACGTGTCGTCCTGAATTCGAAGGTAGTTGTCCTT
GCTTCCGCAGGATTGAAAGAGAGCAGACACATGGAAATCAACAATATCGG
AGCTTCCATCAGAGTAGATGTCGAGTATTGGGGTATTGCTATCTTCATAG
ATCCATTCGAAAATGCCCCACTTGGAGGCTTTGGCTGCATTGTACTTCAA
TTCTTTCTTGGCTGTACCTGTGCCTAGTGATAGTACCAGCATA
back to top