DN617797

Overview
NameDN617797
Unique NameDN617797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617797 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  362 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYL 544
            VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+L
Sbjct:  119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFL 179
[Close]
BLAST of DN617797 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  362 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYL 544
            VS+EL+ KTG  K+T+  YA K+  D  G + YE++F+VP+GFG IGA++V NE  +EM+L
Sbjct:  137 VSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFL 197
The following BLAST results are available for this feature:
BLAST of DN617797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LOXC1_ORYSJ7.807e-1252.46Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ2.271e-1150.82Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01L06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617797 ID=DN617797; Name=DN617797; organism=Citrus sinensis; type=EST; length=546bp
ATAAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGAAGCCAC
AGGTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCCAAGCCG
TTTCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATCAACTTC
TACACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAA
ACACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAG
GCTGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAATATTTC
TTTAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTCC
TCTTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAA
TCCACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAA
CATGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTG
GCGCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAA
back to top