DN617795

Overview
NameDN617795
Unique NameDN617795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4898 contig Csv1_Contig4898:36..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.507e-41
Identity = 79/148 (53.38%), Postives = 105/148 (70.95%), Query Frame = -3
Query:  141 SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS-TWYEDGKRQPPCIAADIGSENCVCAAHK 581
            S +EY+ S DATI GSRNG  PIFLWY L++KG+   Q++   C+ NA YLKDRLL+AGIS MLN+ S TVVFERP D +F+RRW L C   +AHVV+MP +T + +D F  +L+  R+  WY+D K  PPC+A D+ + NC+C+  K
Sbjct:  264 SKIEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERNYKWYQDVKALPPCLADDL-ALNCMCSNKK 410          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 47/121 (38.84%), Postives = 75/121 (61.98%), Query Frame = -3
Query:  237 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 596
            ++ +S  V+Y++SRD TI GSRNGH+ +F+W  +    +  +Q +V +CL  A Y   R  + GI+A  N+ S+TVVF  P  E   R+  LA  G++AH++ MP++   DKLD  + ++I
Sbjct:  251 VDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -3
Query:  216 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELIDNRSTWY 596
            ++ +S  V+Y++SRD TI GSRNGH+ +F+W  +       +Q +V+ CL  A Y   RL  AGI A  N+ S+TVVF  P  E   R+  LA  G++AH+V MP++ +  +LD  ++++I + S  Y
Sbjct:  251 VDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSNTVVFPCP-SEPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVIFDLSPEY 377          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = -3
Query:  225 NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS 578
            N++Y+ S D T+ GSRN   PI LWY +   G +G ++  Q+C R A Y  D L   G+SA  N  + TVV   P ++    +WQ+A Q +++H+VV P  T  + D  + E I NR+
Sbjct:  254 NIDYIGSSDTTLSGSRNAFTPIILWYAIRSLGIEGIKQTFQQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPGTTKQQADALI-ETISNRN 368          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = -3
Query:  255 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 596
            ++ +S  ++Y+++ D TI GSRNGH P+ LW  +     + +++ + + L  A Y  DR+  AGI+A  N+ S TVVF  P  E   R   LA  G++AH++     +  V IDKL D
Sbjct:  251 VDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 39/121 (32.23%), Postives = 71/121 (58.68%), Query Frame = -3
Query:  237 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 596
            ++ +S  ++Y+++ D TI GSRNGH P+ +W  +    ++ +++ +++ L  A Y  DR   AGI A  N+ S TVVF  P  E   ++  LA  G+IAH++    ++   K+D  ++++I
Sbjct:  251 VDRISVEIDYISAHDKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVI 370          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = -3
Query:  279 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 587
            +S  V+Y+ + D TI GSRNGH P+ +W  L    +  ++  ++  L  A Y  DR   +GI A  NE S TVVF  P  E    ++ LA  GN AH++  P+
Sbjct:  255 ISVEVDYIRAHDKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCLATSGNSAHLITTPH 356          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  237 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNELI 587
            +S +V+Y+ + D TI GSRNGH P+ +W  L       +++ V+  L +A Y  DRL  AGI A  ++ S TVVF  P      R++ LA  G+ AH++  P+   DK  +D  ++E+I
Sbjct:  254 ISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRLQAAGIDAWRHDNSITVVFPCP-SSRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDEVI 370          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  291 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 587
            +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  254 ISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  291 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 587
            +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  254 ISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
The following BLAST results are available for this feature:
BLAST of DN617795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_SOLLC1.507e-4153.38Histidine decarboxylase OS=Solanum lycopersicum GN... [more]
DCHS_VIBAN1.792e-1838.84Histidine decarboxylase OS=Vibrio anguillarum GN=h... [more]
DCHS_VIBHB3.057e-1839.06Histidine decarboxylase OS=Vibrio harveyi (strain ... [more]
DCHS_RHILO1.087e-1538.14Histidine decarboxylase OS=Rhizobium loti GN=hdc P... [more]
DCHS_MORMO4.569e-1436.44Histidine decarboxylase OS=Morganella morganii GN=... [more]
DCHS_KLEPL5.967e-1432.23Histidine decarboxylase OS=Klebsiella planticola G... [more]
DCHS_PSEFL2.267e-1337.86Histidine decarboxylase OS=Pseudomonas fluorescens... [more]
DCHS_PSEE42.267e-1336.97Histidine decarboxylase OS=Pseudomonas entomophila... [more]
DCHS_ACIBY1.470e-1238.38Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBC1.470e-1238.38Histidine decarboxylase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617795 ID=DN617795; Name=DN617795; organism=Citrus sinensis; type=EST; length=598bp
TTTTATTAAAAACGTAACTAATATGAAACATTATAGAACCTGGAAAATGT
TGCCGATACAAATTCTGATTCCATTACAAATAAAGAATTCTGCTACAACA
AGACAACAAACTGAAACAATCCTAAGCCATAATGATTTCACTTGTGCGCA
GCACAAACACAATTCTCACTTCCTATATCTGCTGCAATGCAAGGAGGCTG
TCTTTTTCCATCCTCATACCATGTTGAGCGATTGTCTATTAACTCGTTCA
AGAAATCATCCAGCTTGTCAATTGTGACATTGGGCATCACTACTACATGT
GCAATGTTACCTTGGCAAGCAAGCTGCCACCTACGGACAAACTCTTCATC
TTGAGGACGCTCAAACACAACGGTGCTGCTAAGCTCATTCAACATGGCAC
TAATCCCAGCATCAAGAAGGCGGTCCTTCAAGTAGTGAGCATTTCTAAGA
CACTTCTGGACTTCTTTCTGGAACCCTTTGTAACCTTTTCTATTGAGGGT
GTACCAGAGGAAGATAGGAGCATGGCCATTTCGGCTTCCCATGATTGTGG
CATCTCTTGAAGCAAGGTACTCTACATTGCTTGAAAGGACATTGATGT
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