DN617794

Overview
NameDN617794
Unique NameDN617794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4237 contig Csv1_Contig4237:224..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  342 VLARYRKTLMERTKHHLGYPYNLDFDYGA-LAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            +L +Y +TL ER K+H+GYP N+ +++ A LA L  F +NN GDPF +     HS+ FEV VLDWFA+LWE+E +EYWGYIT+ GTEGNL
Sbjct:   17 ILTQYLETLSERKKYHIGYPINMCYEHHATLAPLLQFHLNNCGDPFTQHPTDFHSKDFEVAVLDWFAQLWEIEKDEYWGYITSGGTEGNL 106          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  363 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++ E     LGYP+  DFDY  L +    + NNLGDPF    Y V+S  FE  V+D+FARL+   + E WGY+TN GTEGN+
Sbjct:   16 SMQEANGCFLGYPFAKDFDYEPLWRFMSLTGNNLGDPFEPGTYRVNSHAFECDVVDFFARLFRACSCEVWGYVTNGGTEGNI 97          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY  L +   FSINN GD   ESNY ++S  FE  V+ +F++L+ + + E WGYI+N GTEGNL
Sbjct:   25 NVGYPESADFDYSELEKFMKFSINNCGDWREESNYKLNSFDFEKDVMRYFSQLFNIPHQESWGYISNGGTEGNL 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBT (Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB5 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB0057) GN=hdc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB3 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB307-0294) GN=hdc PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY AL +   FSINN GD    SNY ++S  FE  V+ +FA ++++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEESWGYVTNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  372 ERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            E    ++GYP +  FDY  L +   FSINN GD   ESNY ++S +FE  V+ +F++L+++  N+ WGYI+N GTEGN+
Sbjct:   20 ENQYFNVGYPESAAFDYSILEKFMKFSINNCGDWREESNYKLNSFEFEKEVMRFFSQLFKIPYNDSWGYISNGGTEGNM 98          
BLAST of DN617794 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  387 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 608
            ++GYP + DFDY  L +   FSINN GD     NY ++S  FE  V+++FA+L+++   E WGY+TN GTEGN+
Sbjct:   25 NIGYPESADFDYTILERFMRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFAQLFKIPFEESWGYVTNGGTEGNM 98          
The following BLAST results are available for this feature:
BLAST of DN617794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_SOLLC7.859e-2556.67Histidine decarboxylase OS=Solanum lycopersicum GN... [more]
DCHS_RHILO7.373e-1547.56Histidine decarboxylase OS=Rhizobium loti GN=hdc P... [more]
DCHS_VIBHB2.145e-1450.00Histidine decarboxylase OS=Vibrio harveyi (strain ... [more]
DCHS_ACIBY6.241e-1448.65Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBT6.241e-1448.65Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBC6.241e-1448.65Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB56.241e-1448.65Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB36.241e-1448.65Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_VIBAN1.816e-1345.57Histidine decarboxylase OS=Vibrio anguillarum GN=h... [more]
DCHS_KLEPL3.098e-1347.30Histidine decarboxylase OS=Klebsiella planticola G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617794 ID=DN617794; Name=DN617794; organism=Citrus sinensis; type=EST; length=610bp
ACGAGTACACCGGCCTCTTAGTCCACCAATCAAATCAAAGGACTCTCATT
TCCATTCTCAGATCAAAGGATCAGTTATTTTTAGCAAGTTATATGGCTGA
AGCGATGATGAAGCAGGTGAACGGAGGGTTGGCCGAGAAATTTGGTCCGG
TCTTCGATCCAACGGCCGTGGTGGCGGAACCGGTGCCTCCGGTGGTGACG
GAAAACGGCCATGAGCTGAAGCATAAGACCGCCGAGAAAGAGATTGTGCT
TGGGAAGAACGTACACGCGTCGTGCTTCTCTGTCACGGAACCCGAGGCAG
ACGACGAGTTCACTGGCGACAAGGAGGCTTACATGGCTGGGGTCTTGGCT
CGATATAGGAAGACCTTAATGGAACGGACCAAACACCATTTAGGTTATCC
TTATAATCTGGACTTCGATTATGGTGCTCTTGCTCAGTTGCAGCATTTCT
CCATCAATAATCTTGGGGATCCATTTATTGAGAGCAACTATGGTGTTCAT
TCAAGACAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGTCTTTGGGA
ACTAGAGAATAATGAGTACTGGGGATACATTACAAACTGTGGTACAGAAG
GCAACCTTCA
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