DN617790

Overview
NameDN617790
Unique NameDN617790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5855 contig Csv1_Contig5855:1147..1729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.320e-63
Identity = 110/139 (79.14%), Postives = 124/139 (89.21%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QYNIEDPKNPVLTGQ+WVGGL QKGSPV AV +DG  +Q +VP ++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  352 QYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGEDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.326e-47
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I DP+NP L GQ+++GG   +G PV  + D     Q D   V+G ++ GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS MLQIDV++EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  334 QYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDKDLECQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.955e-47
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I D +NP L GQ+++GG  Q+G PV  + D     Q D  +V+G  + GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ MLQIDV+++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  334 QYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.597e-47
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I DP+ P LTGQ++VGG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.466e-46
Identity = 87/139 (62.59%), Postives = 108/139 (77.70%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I DP+ P LTGQ+++GG   KG PV  + D+    Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.266e-46
Identity = 84/139 (60.43%), Postives = 108/139 (77.70%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I + +NP L GQ+++GG  QKG PV    D     Q D  +V+G  + GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ MLQIDV++EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.117e-45
Identity = 86/139 (61.87%), Postives = 105/139 (75.54%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I DPK P L GQ+++GG   KG PV  + D     Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS MLQIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  334 QYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 87/139 (62.59%), Postives = 104/139 (74.82%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I +PK P LTGQ+++GG   KG  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.982e-43
Identity = 83/139 (59.71%), Postives = 103/139 (74.10%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I +P+ P L GQ+++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+SAWD QFYP+L  +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.415e-43
Identity = 82/139 (58.99%), Postives = 103/139 (74.10%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I +P+ P LTGQ+++GG   +G  V  + D     Q +   V+G R+ GGPQMIQLSLDGKRLY T SL+S WD QFYP+L  +GS MLQ+DV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  334 QYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
The following BLAST results are available for this feature:
BLAST of DN617790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP_ARATH1.320e-6379.14Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_XENTR1.326e-4761.87Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1A_XENLA2.955e-4761.87Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_PONAB8.597e-4764.03Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN1.466e-4662.59Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1B_XENLA4.266e-4660.43Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_BOVIN2.117e-4561.87Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_RAT6.161e-4562.59Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE1.982e-4359.71Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE4.415e-4358.99Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617790 ID=DN617790; Name=DN617790; organism=Citrus sinensis; type=EST; length=583bp
AGTTTATTTACTGCATAAATCAAACCATTATCTTAAACTGGCTATTCCAG
AACCAGAACGGACACTGACTTCCACATACAAACGTAATCACCCCATCAAT
CAAAGCGGTATCCTATCTGGACATGATGGACACCGTTTATTGCCAGAATA
GATTAAGATGGTTAAATCCATATATCTGAAGTGCAATCACCACCAGGATA
CCTCATCTCATGAGCTAGGGCAGGACCATCAGGTTCAGCTTCAAAGTCCA
CAAAAAAGTTTGGATTGATAGCCATACCACCCTTCTCGGAGTTGACATCA
ATCTGTAACATGTGGGATCCTTTCTCCTTGAGTTCAGGATAAAATTGACA
ATCCCATGCACTAAAGAGCGAGTTGGTAACATAGAGCCGCTTCCCATCTA
AGCTTAACTGAATCATCTGAGGTCCCCCTCTCAAACGATGCCCCTGGACC
GATGGAACATCAGACTGATATGGCTGACCATCATCTGTTACAGCCACTAC
AGGACTTCCTTTCTGAAACAGCCCCCCGACCCAGACTTGGCCTGTCAATA
CAGGATTTTTGGGATCCTCAATGTTATACTGTC
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