DN617788

Overview
NameDN617788
Unique NameDN617788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2941 contig Csv1_Contig2941:351..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617788 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.466e-34
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = -1 
Query:  221 HNEILEIYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 427
            HNEILE+YR YI+P F W NFTLEEQAKVIVAPRSNNE+DASKLK EFPELLSIKESLIKY + PNKKT
Sbjct:  601 HNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669

HSP 2 Score: 42.3578 bits (98), Expect = 9.466e-34
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = -3 
Query:  432 EMAKRNLTGIWNFTNPGVV 488
            EMAKRNL GIWNFTNPGVV
Sbjct:  581 EMAKRNLKGIWNFTNPGVV 599
[Close]
BLAST of DN617788 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.731e-32
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = -1 
Query:  221 HNEILEIYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 427
            HNEILE+Y+ YI+P+F W NF LEEQAKVIVAPRSNNE+D +KL  EFPE+LSIK+SLIKYVFEPNK+T
Sbjct:  596 HNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664

HSP 2 Score: 42.3578 bits (98), Expect = 1.731e-32
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = -3 
Query:  432 EMAKRNLTGIWNFTNPGVV 488
            EMAKRNL GIWNFTNPGVV
Sbjct:  576 EMAKRNLRGIWNFTNPGVV 594
[Close]
BLAST of DN617788 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.822e-32
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = -1 
Query:  221 HNEILEIYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 427
            HNEILE+Y+ YI+P F W NFT+EEQAKVIVA RSNNE+D SKL  EFPE+LSIKESL+KYVFEPNK+T
Sbjct:  599 HNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667

HSP 2 Score: 42.3578 bits (98), Expect = 3.822e-32
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = -3 
Query:  432 EMAKRNLTGIWNFTNPGVV 488
            EMAKRNL GIWNFTNPGVV
Sbjct:  579 EMAKRNLRGIWNFTNPGVV 597
The following BLAST results are available for this feature:
BLAST of DN617788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RHM1_ARATH9.466e-3484.06Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH1.731e-3276.81Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH3.822e-3276.81Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01L02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617788 ID=DN617788; Name=DN617788; organism=Citrus sinensis; type=EST; length=490bp
TTTTTTTTTTTTTTTTTAAAAATTCTACTTAACAAATCACTTTTGGCTAA
TTTATTCAAGATTGAGTTGTGAATACAGCGTTGAGATACAAGGAGGAGTA
ATCATGCATGTTGTACTGGGACGAGGAAAATAGCATTGGGATCACATCAA
CCTGCGTAAACAAAATTCAATAAATAGGGAAACTGAAAAACCTCAAACCT
AAAGAGTTTCACACTCCAGTGGTCTTCTTGTTTGGCTCAAAAACATATTT
GATGAGGGACTCCTTAATGGACAAGAGCTCAGGGAATTCCGTCTTCAATT
TACTGGCATCAAGCTCGTTGTTGCTCCTTGGGGCAACAATCACCTTTGCC
TGCTCTTCCAAGGTAAAATTTTTCCAAGTGAAGTTGGGGTCTATGTACTG
CCGATAAATCTCCAGAATCTCATTGTGGCCTCACCACACCGGGGTTCGTA
AAGTTCCAAATTCCAGTGAGGTTTCTCTTTGCCATCTCAA
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