CX045687

Overview
NameCX045687
Unique NameCX045687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX045687 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = -1
Query:  532 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAKAGLSD 705
            AEALNEWDGGLVLVSHDFRLINQVAHEIWVCE Q +T+W GDIMDFK+HLKAKAGL D
Sbjct:  538 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAKAGLED 595          
BLAST of CX045687 vs. ExPASy Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = -1
Query:  547 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAK 705
            A+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K+HLK+K
Sbjct:  561 ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 613          
BLAST of CX045687 vs. ExPASy Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = -1
Query:  547 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAK 705
            A+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K+HLK+K
Sbjct:  556 ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 608          
BLAST of CX045687 vs. ExPASy Swiss-Prot
Match: ABCF2_BOVIN (ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 34/53 (64.15%), Postives = 47/53 (88.68%), Query Frame = -1
Query:  547 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAK 705
            A+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K+HLK+K
Sbjct:  558 ADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 610          
BLAST of CX045687 vs. ExPASy Swiss-Prot
Match: ABCF2_DICDI (ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = -1
Query:  547 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKQHLKAK 705
            A A+N + GG++LVSHDFRLI+QVA EIWVC+N+ +T+W GDI  +K HLKA+
Sbjct:  526 ALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTITKWAGDITSYKNHLKAQ 578          
The following BLAST results are available for this feature:
BLAST of CX045687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AB1F_ARATH4.690e-2587.93ABC transporter F family member 1 OS=Arabidopsis t... [more]
ABCF2_MOUSE2.333e-1666.04ATP-binding cassette sub-family F member 2 OS=Mus ... [more]
ABCF2_HUMAN2.333e-1666.04ATP-binding cassette sub-family F member 2 OS=Homo... [more]
ABCF2_BOVIN5.198e-1664.15ATP-binding cassette sub-family F member 2 OS=Bos ... [more]
ABCF2_DICDI1.672e-1462.26ABC transporter F family member 2 OS=Dictyostelium... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_3D08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-3D08-G15-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX045687 ID=CX045687; Name=CX045687; organism=Citrus sinensis; type=EST; length=705bp
TAAAAATTTAAGATACCCAACTTCCCATTAGGGAAACAACTGAAGAAAAG
AACACTATTTAGGGACACCCAGACCTCTGATAGTAATACTGACGAAAAAG
TTGGGTGGCCAAAGAAACATTGCGTATTCCGCTTTTCATAAAATATTATA
ATCTCTCTCGAGTACAACATATAATAAAAGTCCAATAGCACATAAACATT
CGCGTCTAAACCTAAATATATGTTTAGCCATATGTCATCTTCTTGGCCAA
GGAACCAAGGAATATGATAAGGAAGGGCAAATGTAACCAAGAACAAAAAT
ATCACCTAACAACTTCGCAGATAATTATGGAATGAACCAGCGGCATACAA
TAAATAAGCCGTCGTCCCTCCTGCTGCTACATAAAACTTTCGTCATAATC
CCCACCTTGGGGAAAACATCAACCAGTGGTGGCGATCACTTGGGCCTACT
ACAGTCTTAAGCCAAATGTGTAATAAAAATAGCAGCACTATTACATTGTC
TTCAAATTCATCCTATGGTGATCTTCTTTCAATCAGATAGACCAGCCTTG
GCCTTCAGGTGCTGCTTAAAGTCCATAATGTCACCCTCCCACCGGGTAAC
GGCTTGATTTTCACACACCCATATTTCATGGGCTACCTGGTTTATGAGCC
TGAAATCATGGCTGACGAGAACCAGACCCCCATCCCACTCATTCAATGCC
TCAGC
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