DN617782

Overview
NameDN617782
Unique NameDN617782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8025 contig Csv1_Contig8025:318..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.272e-45
Identity = 88/97 (90.72%), Postives = 96/97 (98.97%), Query Frame = -3
Query:  295 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 585
            M+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN
Sbjct:   82 MNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.700e-45
Identity = 87/97 (89.69%), Postives = 96/97 (98.97%), Query Frame = -3
Query:  295 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 585
            M+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN
Sbjct:   82 MNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 75/94 (79.79%), Postives = 88/94 (93.62%), Query Frame = -3
Query:  298 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 579
            R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+
Sbjct:   80 RVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.275e-37
Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = -3
Query:  292 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 579
            R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+
Sbjct:   84 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.404e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 4.100e-36
Identity = 71/96 (73.96%), Postives = 87/96 (90.62%), Query Frame = -3
Query:  292 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 579
            R G L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   82 RLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177          
The following BLAST results are available for this feature:
BLAST of DN617782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS92_ARATH1.272e-4590.7240S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH3.700e-4589.6940S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN4.381e-3879.7940S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME1.275e-3779.1740S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT2.404e-3675.7940S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN2.404e-3675.7940S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE2.404e-3675.7940S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN2.404e-3675.7940S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN2.404e-3675.7940S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO4.100e-3673.9640S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617782 ID=DN617782; Name=DN617782; organism=Citrus sinensis; type=EST; length=587bp
ACGGAGATTTAATTTAGGGTATAAAATAGCTTAAAGATCAAAGAGTACAT
CCCAAAAAACAAAAACAACTCTCTCAATGAGTAGTCTGTAAAACACAAAG
CAAGCAAAACCTCCTATTATAGCAAGAAAATTCGCAAATAAAAACATAAA
ACTTAGAGAAGATAAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGT
AACCATAAAAAAACTATCTGTTCACACAGGTAATTTATTCTTCATCCTCT
TCATCCCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCT
TCTCTTCACTCTTCCAGGGCGCCCACCTCCGAATGGACTTGTGAGTGAGA
ATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGTTG
ACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGC
ATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGAC
GACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTG
TTCTGGCTCTCTTCCAAGAAGCCGTACCTGTGCATCC
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