DN617771

Overview
NameDN617771
Unique NameDN617771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2A_ARATH (Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 1.789e-95
Identity = 176/226 (77.88%), Postives = 188/226 (83.19%), Query Frame = 3
Query:  117 MGSLKNETGNEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            MGSLK   G ++ + E E  EP+LM QNQRF MFPIRYK +WEMYKKAEASFWTAEEVDLS DVQ WE L DSEKHFISH+LAFFAASDGIVLENLAARFLND+Q+PEARAFYGFQIAMENIHSEMYSLLLET+IKDSKEK RLFNAIE IPC+++KAKW LDWI S           PM    SFA RLV FACVEGIFFSGSFCAIFWL KRGLMPGLTFSNEL
Sbjct:    1 MGSLKEGQGRDMEEGESE--EPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-----------PM----SFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEL 209          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_TOBAC (Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.602e-82
Identity = 148/207 (71.50%), Postives = 164/207 (79.23%), Query Frame = 3
Query:  174 QEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            +EP+L     RFCMFPI+Y Q+WEMYKKA ASFWTAEEVDLS D +HWE L   E+HFI+HVLAFFAASDGIVLENLA RF+ ++Q+ EARAFYGFQIA+ENIHSEMYSLLLE+YIKDS EK RLF A+E  PCV +KAKWAL WI                 S +FAERLV FACVEGIFFSGSFCAIFWL KRGLMPGLTFSNEL
Sbjct:    6 EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKKAKWALRWID---------------GSETFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEL 197          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.921e-81
Identity = 147/208 (70.67%), Postives = 168/208 (80.77%), Query Frame = 3
Query:  174 QEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLL-DSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            +EP+L     RFCMFPI Y Q+WEMYKKAEASFWTAEEVDLSQD + WE  L D E+HFI HVLAFFAASDGIVLENLA+RF++D+Q+ EARAFYGFQIA+ENIHSEMYSLLL+TYIKD+KE+  LF AIE IPCVA+KA+WA+ WI                 S +FAER++ FACVEGIFFSGSFC+IFWL KRGLMPGLTFSNEL
Sbjct:    6 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKKAQWAMKWID---------------GSQTFAERIIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNEL 198          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2B_ARATH (Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.276e-81
Identity = 148/208 (71.15%), Postives = 168/208 (80.77%), Query Frame = 3
Query:  174 QEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWER-LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            +EPIL     RFCMFPI+Y Q+WEMYKKAEASFWTAEEVDLSQD + WE  L + E+HFI HVLAFFAASDGIVLENL+ RF++D+QI EARAFYGFQIA+ENIHSEMYSLLL+TYIKD+KE+  LF AIE IPCV +KA+WA+ WI+                S SFAER+V FACVEGIFFSGSFC+IFWL KRGLMPGLTFSNEL
Sbjct:    6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVTKKAEWAMKWIN---------------GSQSFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNEL 198          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_MESAU (Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.351e-77
Identity = 140/220 (63.64%), Postives = 165/220 (75.00%), Query Frame = 3
Query:  135 ETGNEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            E  ++V+     + EP+L E  +RF +FPI Y  +W+MYKKAEASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKDSKE+  LFNAIE +PCV +KA WAL WI                  +++ ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   57 EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGD--------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 262          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_RAT (Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.425e-76
Identity = 138/208 (66.35%), Postives = 161/208 (77.40%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ++EP+L E  +RF +FPI Y  +W+MYKKAEASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKDSKE+  LFNAIE +PCV +KA WAL WI                  +++ ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   69 EEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGD--------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 262          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_DANRE (Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.430e-76
Identity = 137/208 (65.87%), Postives = 163/208 (78.37%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ++EP+L E   RF +FPI+Y  +W+MYKKAEASFWTAEEVDLS+D+QHW+ L D E++FISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKDSKE+  LFNAIE +PCV +KA WAL+WI                 ++ + ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   65 EEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGD--------------KNARYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 258          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.233e-76
Identity = 137/208 (65.87%), Postives = 159/208 (76.44%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + EP+L E  +RF +FPI Y  +W+MYKKAEASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+  LFNAIE +PCV +KA WAL WI                  +++ ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   69 EDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGD--------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 262          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_MACFA (Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis GN=RRM2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.582e-75
Identity = 137/208 (65.87%), Postives = 159/208 (76.44%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + EP+L E  +RF +FPI Y  +W+MYKKAEASFWTAEEVDLS+D+QHWE L   E++FISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+  LFNAIE +PCV +KA WAL WI                  +++ ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   68 EDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWIGD--------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 261          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.582e-75
Identity = 137/208 (65.87%), Postives = 159/208 (76.44%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + EP+L E  +RF +FPI Y  +W+MYKKAEASFWTAEEVDLS+D+QHWE L   E++FISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+  LFNAIE +PCV +KA WAL WI                  +++ ER+V FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   68 EDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGD--------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 261          
The following BLAST results are available for this feature:
BLAST of DN617771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RIR2A_ARATH1.789e-9577.88Ribonucleoside-diphosphate reductase small chain A... [more]
RIR2_TOBAC6.602e-8271.50Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2C_ARATH1.921e-8170.67Ribonucleoside-diphosphate reductase small chain C... [more]
RIR2B_ARATH3.276e-8171.15Putative ribonucleoside-diphosphate reductase smal... [more]
RIR2_MESAU8.351e-7763.64Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_RAT1.425e-7666.35Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_DANRE2.430e-7665.87Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MOUSE9.233e-7665.87Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MACFA4.582e-7565.87Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_HUMAN4.582e-7565.87Ribonucleoside-diphosphate reductase subunit M2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617771 ID=DN617771; Name=DN617771; organism=Citrus sinensis; type=EST; length=795bp
CAACAATTGAAAATCTGTCCACTTGCTCTCTTTAACAACAAGAGGTTTTT
GCAGGGTTTTATTACTTTTCTTTCTCTTCTCGCCACAAATAACGAAAACA
GAACTTGTGAGAAAAAATGGGTTCCTTGAAAAATGAAACAGGGAATGAAG
TAAACCAACGTGAACAGGAAGACCAAGAGCCAATATTAATGGAACAAAAC
CAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAACTTTGGGAGATGTA
CAAGAAGGCTGAAGCCAGTTTTTGGACCGCCGAGGAGGTTGATCTTTCCC
AGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACACTTTATA
AGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTTTGGAAAA
TTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCTCGAGCGT
TTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGATGTACAGC
TTGCTTCTGGAGACATACATCAAAGACTCAAAAGAGAAGCATAGATTGTT
TAATGCAATTGAAAACATTCCCTGTGTGGCTCGTAAGGCTAAATGGGCTC
TGGATTGGATTCATAGTTGATGCAAAGGGAGGTCTGTCATCTCATTGTGC
CCCATGTGCAGTTCCAGCTCATTTGCAGAGAGACTTGTAGGTTTTGCTTG
TGTTGAAGGAATCTTCTTTTCAGGAAGCTTTTGTGCCATATTCTGGCTTN
AAAAGAGGGGACTGATGCCAGGTTTGACGTTCTCAAACGAGCTTA
back to top