DN617745

Overview
NameDN617745
Unique NameDN617745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617745 vs. ExPASy Swiss-Prot
Match: SYC_ANAD2 (Cysteinyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=cysS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  263 LHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 568
            L  RKGKK +     LAA  +  R V  VLG++    ++ L  +R++A  R  +   +V + I +R  AR  K++ +SDAIR  L A G+ LMD P GTTW+
Sbjct:  378 LADRKGKKSSEEKARLAAFARGARAVGAVLGILDRPPAQALTAIRDRAAARRGIDGGEVERSIAERAAARAAKDFARSDAIRDALLARGVVLMDGPQGTTWK 479          
BLAST of DN617745 vs. ExPASy Swiss-Prot
Match: SYC_ANADE (Cysteinyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=cysS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  263 LHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 568
            L  RKGKK       LAA  +  R V  VLG++    ++ L  +R++A  R  +   +V + I +R  AR  K++ +SDAIR  L A G+ LMD P GTTW+
Sbjct:  378 LADRKGKKSPEEKARLAAFARGARAVGAVLGILGRPPAQALSAIRDRAAARRGIDGSEVERLIAERAAARAAKDFARSDAIRDGLLARGVVLMDGPQGTTWK 479          
BLAST of DN617745 vs. ExPASy Swiss-Prot
Match: SYC_ANASK (Cysteinyl-tRNA synthetase OS=Anaeromyxobacter sp. (strain K) GN=cysS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  263 LHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 568
            L  RKGKK       LAA  +  R V  VLG++    ++ L  +R++A  R  +   +V + I +R  AR  K++ +SDAIR  L A G+ LMD P GTTW+
Sbjct:  378 LADRKGKKSPEEKARLAAFARGARAVGAVLGILDRPPAQALSAIRDRAAARRGIDGGEVERSIAERAAARAAKDFARSDAIRDALLARGVVLMDGPQGTTWK 479          
BLAST of DN617745 vs. ExPASy Swiss-Prot
Match: SYC_ANADF (Cysteinyl-tRNA synthetase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=cysS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  263 LHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 568
            L  ++GKK       LAA  + +R + T LGL+    +E L  +R +A  R  +    V  +I +R  AR+ +++ +SDAIR  L A G+ALMD P GTTW+
Sbjct:  379 LADKRGKKTPEDRARLAAFARDVREIGTTLGLVQRRPAEALRAIRARAAARRGIDPASVEAKIVERAEARRARDFARSDAIRDALLAQGVALMDGPQGTTWK 480          
The following BLAST results are available for this feature:
BLAST of DN617745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SYC_ANAD21.048e-1239.22Cysteinyl-tRNA synthetase OS=Anaeromyxobacter deha... [more]
SYC_ANADE1.787e-1239.22Cysteinyl-tRNA synthetase OS=Anaeromyxobacter deha... [more]
SYC_ANASK2.334e-1239.22Cysteinyl-tRNA synthetase OS=Anaeromyxobacter sp. ... [more]
SYC_ANADF2.334e-1238.24Cysteinyl-tRNA synthetase OS=Anaeromyxobacter sp. ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617745 ID=DN617745; Name=DN617745; organism=Citrus sinensis; type=EST; length=579bp
GTACGACTACAATTTCAACAAAATTCTTCCCCATGCAATGTAAGTAATCA
TCATAGTCAAATCTCTACCCTCGGCTGAATTTGAATTACAACCCTCTAGA
TGGGACAAAAATACTCCCATCTTCAGAACTCAAAACCCAGTTCCCAAATT
TGTTTAGGAGAAAGAAATCAGTTCTCTGAATTAAAATGATAGAGCATAAT
TGATCCCAGAACCATTAACTTGTAGCAACTGCCTGCTCTTGAAGTGCAAG
AGGAAGAGCCGGTCTCCAAGTTGTGCCCACTGGACTGTCCATAAGAGCAA
TACCCACAGCAGCTAAATCTTTCCTAATTGCATCAGATTTTTCATATTCT
TTGTTTTTTCTTGCCACAGTCCGATCTTCAATTCTTTGCAAAACTTGATC
TTCGGTTAAATCAGCACGCTTTAATGCCTTTTCCCTGAGCTGCAGCAAAA
CCTCAGAGTAACCTGTCGACATCAATCCTAAGACAGTTAGAACATTCCTG
ATTGTCTTTTCCAAAGCTGCAAGAGATTCTAGTCGCATTGCTTGCTTCTT
CCCCTTCCGAGTATGTAGCAGATCATTGA
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