DN617743

Overview
NameDN617743
Unique NameDN617743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.248e-67
Identity = 128/181 (70.72%), Postives = 144/181 (79.56%), Query Frame = 3
Query:   42 MNGDHEAHPNSGDIKAPLLP---SHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQ--ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMH 569
            MNG       S D+K+PLLP   +    +R       L+TIFTP N YI LGPLLCAV+C+CV L G    T+RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SYMDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWMH
Sbjct:    1 MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVCLCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSYMDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWMH 180          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  282 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            +W T+A+P+ +T++ PL LFP+ GI  A  V   Y+ D   L +G  +LA+AVEH+N+HKR+AL + +L     + P LL+LG    TAF+SMW+
Sbjct:   48 FWCTDALPLAVTALLPLCLFPMMGIMEASEVGLEYLKDTNVLFIGGLLLAIAVEHWNLHKRIALRVLLL---TGVRPALLILGFMVVTAFLSMWI 139          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.059e-17
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  285 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            W TEA+P+ +T++ P+ LFPL GI  A  V   Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     + P LLLLG    TAF+SMW+
Sbjct:   49 WCTEALPLAVTALFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLII---GVRPALLLLGFMLVTAFLSMWI 139          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  261 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            V+  +  +W TE +P+ +TS+ P+ LFPLF I  +  V   YM D   L LG  I+A+AVE +N+HKR+AL  T+L+ G    P  L+LG  G TA +SMW+
Sbjct:   41 VIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVAVAVERWNLHKRIALR-TLLWVG--AKPARLMLGFMGVTALLSMWI 139          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  282 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            +W TEA+P+ +T++ PL LFP+ GI  A  VA  Y+ D   L  G  ++A+AVEH+N+HKR+AL + ++     + P  L+LG    TAF+SMW+
Sbjct:   48 FWCTEALPLAVTALFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIV---GVRPAPLILGFMLVTAFLSMWI 139          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  261 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI S+  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+
Sbjct:   40 ILFVIATFWITEALPLSITALLPGLMFPMFGIMSSTHVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWL 138          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.171e-16
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  195 LCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALN-ITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            L  ++C+ V L  +      + +L  +  +W+TEA+P+ +TSM P+  FP+ GI S+D     Y  D + + +G  ++ALAVE+ N+HKRLAL  I I+ C    +P  L  G+   T F+SMW+
Sbjct:   48 LVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGC----SPRRLHFGLIMVTMFLSMWI 168          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.530e-16
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  261 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+
Sbjct:   40 ILFVIAIFWITEALPLSITALLPGLMFPMFGIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWL 138          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 46/131 (35.11%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  177 ILLGPLLCAVICVCVKLDGQATSRN-MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            ++LGPLL  +  +  + D  +     +L +  W+  WW+TEA+P+  TS+ PL L P+  + + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I         +   +LLG    T F+SM++
Sbjct:   35 LILGPLLFVLTLLLFQPDNLSDKGVFVLAITLWIATWWITEAIPIAATSLLPLILLPVGHVLNPEEVSAQYGNDIIFLFLGGFILAIAMERWNLHTRVALRIINTL---GTSTGRILLGFMIATGFLSMFV 162          
BLAST of DN617743 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  252 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWM 566
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFV 163          
The following BLAST results are available for this feature:
BLAST of DN617743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
TDT_ARATH3.248e-6770.72Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A2_RABIT2.788e-1844.21Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_MOUSE1.059e-1744.68Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A5_HUMAN5.258e-1744.12Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A2_HUMAN5.258e-1743.16Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
S13A1_RAT5.258e-1740.20Solute carrier family 13 member 1 OS=Rattus norveg... [more]
INDY1_DROME1.171e-1636.80Protein I'm not dead yet OS=Drosophila melanogaste... [more]
S13A1_MOUSE1.530e-1639.22Solute carrier family 13 member 1 OS=Mus musculus ... [more]
SDCS_STAS11.998e-1635.11Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW1.998e-1640.00Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617743 ID=DN617743; Name=DN617743; organism=Citrus sinensis; type=EST; length=571bp
CTTCAATTTTCTCTCGTATCGTGTTACACGTTCACTGCAAAATGAACGGT
GACCACGAAGCTCATCCAAATTCTGGTGACATCAAGGCGCCACTCCTACC
TTCCCATCGTCAAATCCAACGGTCACCAAGCTCCCACTTCACATTGAAAA
CCATTTTCACACCAAACAATTTCTACATCCTCCTAGGACCTCTCCTGTGC
GCTGTTATATGTGTATGTGTGAAGCTCGATGGGCAGGCGACAAGCAGGAA
CATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGGCTCACGGAGGCCG
TACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCTGTTTCCTCTGTTT
GGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACATGGATGATGTTAT
TGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCCGTTGAGCACTACA
ACATTCACAAAAGATTGGCCTTAAATATAACTATTCTATTCTGTGGAGAG
CCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTGGCACGACAGCATT
CGTGAGCATGTGGATGCATAA
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