DN617742

Overview
NameDN617742
Unique NameDN617742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2854 contig Csv1_Contig2854:365..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.788e-38
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = -3
Query:  256 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTDGDV 540
            SNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   L+ LMPTLGAYVF + G V
Sbjct:  446 SNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMGGV 540          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  481 SNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 569          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  481 SNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQAIF 569          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+ ++DM++TGL + + G+  L+  M T    +F
Sbjct:  483 SNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 571          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+++ DM+KTGL + I GIA++   + T G  VF  D
Sbjct:  468 SNVATTTLFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTGLVMNILGIASVFLSVNTWGRAVFNLD 559          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN ATTTL LP+   +++++ ++PL +M+P  + A F+F+LP  TP N + FT GH+++ DM+KTG+ + I G+  +   + T G  +F  D
Sbjct:  464 SNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLD 555          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN ATTTL LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+ + DM+KTGL +   GI ++   + T G  +F  D
Sbjct:  468 SNVATTTLFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLD 559          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 35/94 (37.23%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAL-----AFLMPTLGAYVF 540
            SN AT TL LP+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K GL + I G+A +      +++P    Y +
Sbjct:  489 SNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTY 582          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T+ LP+L  +++T+H++PL  ++P  +   F+ +LP G P N + F+ GH +I+DM+K GL + + G+  +   + T G  +F  D
Sbjct:  520 SNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLD 611          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I I+ M   G  + +  I  +  ++  L   V G D
Sbjct:  420 SNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVGFWVNLLSIVVIVLVVYFLVPPVLGID 511          
The following BLAST results are available for this feature:
BLAST of DN617742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TDT_ARATH4.788e-3881.05Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE1.891e-1842.70Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT9.387e-1841.57Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN2.731e-1741.57Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_RAT6.084e-1743.48Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A5_HUMAN1.957e-1539.13Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A5_MOUSE3.339e-1540.22Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A1_HUMAN2.826e-1437.23Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
S13A4_HUMAN6.296e-1435.87Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
SDCS_STAS11.403e-1340.22Sodium-dependent dicarboxylate transporter sdcS OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617742 ID=DN617742; Name=DN617742; organism=Citrus sinensis; type=EST; length=542bp
AAATTATATTTTCGAACTATATATCGTTCAATAAAAGGGAAAAAACTCAA
TATGGTGTGCTAACCACTAAGGGAAGCATTCATTAGGCACGCAAATATAC
AATAGGCGTCTTTTCTTATAGGAAAAGCATCAATTTTTATCATCATCTCA
TCAAACACTAGCATTGCTATAATTCCTATTCAGGGTCCCCCAATGCCTGT
TACGGAGACTTGATTGAGAGAAACCTCCACAGTTTACAAGAGTTTGCAGC
TACTGAACATCCCCATCTGTCCCAAAAACATAAGCACCAAGTGTAGGCAT
TAGAAAGGCCAGAGCAGCAATGCCAGCAATCTTAAGGGGCAGCCCTGTCT
TGATCATATCTTGAATTTCGATGTGCCCGGTTGTGAATCCAACAATATTT
GAAGGGGTTCCAGTCGGCAACAAGAAAGAAAATTGTGCTCCAATTGCTCC
AGGAACCATAAGAAGCAATGGATGAACATGCATAGTTTTTGCTATTTGGA
TCAGAAGTGGAAGAACGAGAGTTGTTGTGGCATTATTTGATG
back to top