DN617738

Overview
NameDN617738
Unique NameDN617738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.299e-30
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F   TN+  + I  DFLKSTSKLIA  LGKPESYVAVH+N  Q + FGG+  PAG   L+S+G +G E N+ H+  ++ H++  LGIP +R+YI FVD   S VGYNGSTF
Sbjct:    1 MPIFTFSTNVPSENISVDFLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.216e-30
Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEP--NKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F L+TNI    +P+DFL STS L+ N L KP SYVAVH+N DQ L FGGS+ PA   TLMSIG  GIEP  N+ H+  ++DH++K LGIPK+R+YI FV+     VG+NG+TF
Sbjct:    1 MPIFTLNTNIKATDVPSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIG--GIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP+F +DTNI ++ I + FLK  S ++A  LGKPESYV++HVN  QA++FGGS DP     L SIG +G + N  HA+ +Y  ++  L IPK+R YI+FVD   S++ +NGSTF
Sbjct:    1 MPYFTIDTNIPQNSISSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.781e-25
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F + TN+ +D +P   L   +KL+A   GKP  Y+A+H+ PDQ + FG S+DP    +L SIGK+G   NK ++K + D+++K + IP +R+YI F D  P+ VG+NGSTF
Sbjct:    1 MPTFTVCTNVCRDSMPDTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.817e-24
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP+F +DTN  +D I + FLK    ++   LGKPESYV++HVN  Q ++FGGS DP     L SIG +G + N  HA+ +Y  ++  L IPK+R YI+ VD   S++ +NGSTF
Sbjct:    1 MPYFTIDTNKPQDSISSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.047e-24
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F + TN+ KD +P   L   ++ +A   GKP  Y+AVH+ PDQ + FGGS+DP    +L SIGK+G + NK + K + D ++K+L +  DR+YI + D   + VG+NGSTF
Sbjct:    1 MPMFTIHTNVCKDAVPDSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.623e-23
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F + TN+ +D +P   L   +K +A   GKP  Y+A+H+ PDQ + FG S+DP    +L SIGK+G   NK + K + D ++K L IP +R+YI + D   + VG+NGSTF
Sbjct:    1 MPVFTIRTNVCRDSVPDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +   +GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI + D   + VG+NGSTF
Sbjct:    1 MPMFVVNTNVPRASVPDGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.880e-21
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P   L   ++ +A   GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI F D   + VG+NGSTF
Sbjct:    1 MPMFVVNTNVPRASVPDGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 102.064 bits (253), Expect = 1.880e-21
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P   L   ++ +A   GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI F D   + VG+NGSTF
Sbjct:    1 MPMFVVNTNVPRASVPDGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of DN617738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MIFH_TRITR1.299e-3055.26Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRISP2.216e-3056.90Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA1.344e-2750.00Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR4.781e-2544.74Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA1.817e-2446.49Macrophage migration inhibitory factor homolog OS=... [more]
MIF_CHICK4.047e-2443.86Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_XENLA2.623e-2342.98Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_PIG1.102e-2141.23Macrophage migration inhibitory factor OS=Sus scro... [more]
MIF_SHEEP1.880e-2142.11Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN1.880e-2142.11Macrophage migration inhibitory factor OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617738 ID=DN617738; Name=DN617738; organism=Citrus sinensis; type=EST; length=548bp
CCTTTTTTTTCCGAAAAAAAATTATATTATCACACGAATTGGAATATAAA
ACAGATTAAAATAATGGATTATTTTAATCCATCTCTCTGATACAAAATAA
TAAGATCAGCTTGTTATTCGAAAAAGTCTCGCATTCATCATACCGCTCGT
TGAAATTCGCCTCTTATTAATCTTGCTAGTTGTCGCCAAGCATTGGATGA
AACGTCGAACCGTTATATCCTACGGTAGATGGTGCAGCATCAACGAATTG
AATGTACAACCTATCCTTTGGAATTCCCAAATTTTTCGAGACGTGATCGT
AAATAGCTTTGGCATGTTTTTTGTTCGGTTCGATGCCAAGTTTTCCTATG
CTCATCAAAGTAGCATTGCCAGCTGGATCACTGGATCCACCAAATATGAG
AGCTTGATCAGGATTCACATGCACTGCAACGTAGCTCTCCGGTTTACCCA
AAGTATTAGCAATTAGTTTTGAAGTCGATTTCAAAAAATCGGCTGGTATT
TTATCTTTTGAAATGTTGGTATCCAACTTGAAAAACGGCATTATTTCA
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