FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1666 contig Csv1_Contig1666:1..192. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.517e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_WHEAT9.517e-2296.23Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN9.517e-2296.23Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU9.517e-2296.23Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC9.517e-2296.23Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR9.517e-2296.23Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA9.517e-2296.23Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ9.517e-2296.23Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY9.517e-2296.23Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE9.517e-2296.23Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO9.517e-2296.23Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
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