DN617724

Overview
NameDN617724
Unique NameDN617724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617724_ssr56 microsatellite DN617724_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:276..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 8.508e-45
Identity = 81/121 (66.94%), Postives = 101/121 (83.47%), Query Frame = -3
Query:  119 GAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 472
            G +I CEAQ+T   AVEVP ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL  +IE+FL
Sbjct:   71 GGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 9.406e-44
Identity = 75/115 (65.22%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  119 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 463
            I+CEAQ+TA  +P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TL TSI+KFL
Sbjct:   62 IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.097e-43
Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = -3
Query:  119 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 463
            ++  A+E   EV  V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+  +EK++
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.317e-42
Identity = 72/115 (62.61%), Postives = 97/115 (84.35%), Query Frame = -3
Query:  119 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 463
            +VCEAQET  ++  V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TLT+S++KFL
Sbjct:   71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.317e-42
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = -3
Query:  119 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 463
            ++CEAQ+TA  +P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL
Sbjct:   65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.741e-42
Identity = 75/117 (64.10%), Postives = 95/117 (81.20%), Query Frame = -3
Query:  119 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 469
            ++  C+      EV    +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I+K++
Sbjct:   54 SRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.502e-41
Identity = 73/117 (62.39%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  119 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 469
            + +VC+A E   EV  V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SIEK+L
Sbjct:   63 SSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  119 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VC+++    EV    +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I+K++
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.398e-39
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = -3
Query:  119 AQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 469
            ++ VC+ +    EV    +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I+K++
Sbjct:   57 SRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 5.527e-36
Identity = 63/105 (60.00%), Postives = 89/105 (84.76%), Query Frame = -3
Query:  119 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 433
            E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+IGAVPK+T+  ++EK+L
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of DN617724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TRXM4_ARATH8.508e-4566.94Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA9.406e-4465.22Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM_PEA6.097e-4365.22Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM2_ARATH2.317e-4262.61Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM1_ARATH2.317e-4264.35Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_ORYSJ6.741e-4264.10Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_SPIOL1.502e-4162.39Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_MAIZE8.240e-4063.16Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT2.398e-3960.68Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM_CHLRE5.527e-3660.00Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617724 ID=DN617724; Name=DN617724; organism=Citrus sinensis; type=EST; length=474bp
TAATTTGATTGTGGAAAGCAAAGTATCTTAACCCAAGGCATAGTAAGCTA
CAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTAGCAAACGCGTC
CTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGTGGTCAAAGTGG
ATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGCCATTCTTAAAT
ATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTAGCAATTGAAGG
ACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCCCACATATTGCT
TTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAGGCCCGCACCAT
GGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCAAGAACAAGTGA
TTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGCAGTTTCTTGAG
CCTCGCACACGATTTGCGCACCGC
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