DN617689

Overview
NameDN617689
Unique NameDN617689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5742 contig Csv1_Contig5742:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.631e-47
Identity = 95/159 (59.75%), Postives = 122/159 (76.73%), Query Frame = -2
Query:  138 VTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWSSPSGLSVIEYLF 614
            +TA T+P D+EWNSG +PISI  V+ FA++L ++KKL+LS   +++E++LEPF FELITVS V  + G    SV+FAPIGLVNMLNT GAI+SL Y+D+  SVE+GV G+GE RV+AS+KP +C IDG  V F YE  MV +QVPWS P GLS I+YLF
Sbjct:  630 LTATTSPKDVEWNSGSSPISIANVEEFALFLSQSKKLLLSGLNDDLELTLEPFKFELITVSPVVTIEGN---SVRFAPIGLVNMLNTSGAIRSLVYNDE--SVEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMVQVPWSGPDGLSSIQYLF 783          
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.940e-44
Identity = 88/159 (55.35%), Postives = 115/159 (72.33%), Query Frame = -2
Query:  138 VTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWSSPSGLSVIEYLF 614
            VT   +P DIEW +GK P+ I+GV VFA+Y  + KKL L K  + +E+SLEPFSFEL+TVS + +    +   +QFAPIGLVNMLN+GGA+QSL +DD  + V+IGV+G GE+ VFASEKP  CKIDG  V F+YE  MV +Q+ W   S LS++E+LF
Sbjct:  643 VTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVF---SKRLIQFAPIGLVNMLNSGGAVQSLEFDDSASLVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYEDKMVRVQILWPGSSTLSLVEFLF 798          
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 69/164 (42.07%), Postives = 104/164 (63.41%), Query Frame = -2
Query:  138 VTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPS--VQFAPIGLVNMLNTGGAIQSL--SYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWS-SPSGLSVIEYLF 614
            VTA+ +P D+EW+ G       G   FA+Y  EA+KL L +  E++E++LEPF++EL+ V+ V  +    SP   + FAPIGL NMLN GGA+Q    +  D + + E+ VKG+GEM  ++S +PR CK++G +  F+YE  +V + VPW+ S   LS +EY +
Sbjct:  628 VTARASPADVEWSHGGG-----GGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAI---VSPELGIGFAPIGLANMLNAGGAVQGFEAARKDGDVAAEVAVKGAGEMVAYSSARPRLCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY 783          
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17
Identity = 52/154 (33.77%), Postives = 88/154 (57.14%), Query Frame = -2
Query:  138 DIEWNSGKNPISIEGVQVFAMYLQEAKKL-VLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGH-MVAIQVPW-SSPSGLSVIEYLF 590
            ++EW+  +    +   + + +YL +A++L +++   E I+ +++P +FEL +   VT L GG    ++FAPIGL NM N+GG +  L Y    N  +I VKG G    ++SE P+  +++G EV FE+ G   + + VPW     G+S +E  F
Sbjct:  706 EVEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGG----IKFAPIGLTNMFNSGGTVIDLEYVG--NGAKIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKLCVNVPWIEEACGVSDMEIFF 853          
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  207 AMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYE 533
            A+Y Q   +L++     ++ +SL+    E+ TVS ++ L  G S    FAPIGLVNM N+GGAI+ L Y+ ++  V + VKG G+   ++S KP+ C ++ NE+AFEY+
Sbjct:  618 AVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDGVS----FAPIGLVNMYNSGGAIEGLRYEAEKMKVVMEVKGCGKFGSYSSVKPKRCVVESNEIAFEYD 722          
BLAST of DN617689 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 53/168 (31.55%), Postives = 93/168 (55.36%), Query Frame = -2
Query:  138 VTAKTNPNDIEWNSGKNPISIEGVQV-----FAMYLQEAKKLV-LSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGH--MVAIQVPWSSPS-GLSVIEYLF 614
            V+   + +DIEW+  +NP    G QV     + +Y Q++++++ ++   E ++I+LEP +F+L++   VT L    S  V+F P+GL+NM N  G +Q +    D NS+ + VKG G    ++S  P  C ++  E  F++E     ++  VPW   S G+S + + F
Sbjct:  716 VSGTVHVSDIEWD--QNP-EAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTEL---VSSGVRFVPLGLINMFNCVGTVQDMKVTGD-NSIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEESGGISHLSFTF 876          
The following BLAST results are available for this feature:
BLAST of DN617689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFS5_ARATH5.631e-4759.75Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA9.940e-4455.35Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ3.104e-2942.07Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA2.726e-1733.77Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS6_ARATH5.140e-1640.37Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH7.423e-1531.55Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617689 ID=DN617689; Name=DN617689; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTAGTAATAAATCTTACTGTACTTTTATTGTACTTGAATAC
ACTTAGTTAAACTTGCTCATAATTTGGCATCAAAATGTGAAATATATAGA
TAACGGACTCTCATTGATATAGCCTGGTCTAGCTCTAAAATAAGTACTCA
ATTACAGATAAACCAGAAGGGCTAGACCACGGCACTTGAATAGCAACCAT
GTGGCCTTCATACTCAAATGCAACTTCGTTTCCATCAATCTTGCAAGCTC
TTGGTTTCTCAGAAGCAAAGACTCTCATTTCACCACTTCCCTTCACTCCA
ATTTCCACTGAATTCTCATCATCATCGTAGGACAAAGACTGGATTGCGCC
GCCGGTGTTGAGCATGTTCACCAGCCCAATGGGAGCAAACTGCACGGATG
GCGATGTTCCTCCAGGCAGCAGAGTCACAGCAGACACAGTGATGAGCTCA
AAACTGAATGGCTCCAATGATATCTCAATGTTTTCATATGGCTTGGAGAG
AACGAGCTTCTTGGCTTCTTGCAAGTACATGGCAAAGACTTGAACCCCTT
CAATGGAAATTGGGTTCTTGCCACTGTTCCATTCAATGTCGTTTGGGTTG
GTCTTGGCTGTCACC
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