DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.712e-48
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RRVPCRK+GG+RFTINGFRYFNLVL+TNVAGAGDIVR SVKG +T W+ MSRNWGQNWQSNS LVGQALSFRVTGSDRRTSTSWN APA W FGQTF GKN
Sbjct:  161 RRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKN 261          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.138e-47
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RRVPCRKRGGIRFTING RYFNLVL+TNVAGAGDIVR SVKG+ T W+S+SRNWGQNWQSN+ LVGQALSFRVTGSDRRTSTSWN+ P+NWQFGQTF GKN
Sbjct:  154 RRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKN 254          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.941e-47
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAG+IVR+ VKG +T W++MSRNWGQNWQSNS LVGQ+LSFRVT SDRR+STSWN+APANW+FGQTF GKN
Sbjct:  154 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKN 254          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 85/101 (84.16%), Postives = 92/101 (91.09%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RRVPCRK GGIRFT+NGFRYFNLVLVTNVAGAGDI  VSVKG+ T W+ MSRNWGQNWQSN+ L+GQ+LSFRVT SDRR+STSWNVAPA WQFGQTFSGKN
Sbjct:  159 RRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKN 259          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45
Identity = 81/101 (80.20%), Postives = 95/101 (94.06%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RR+PCRK+GGIRFTINGF+YFNLVLVTNVAGAGD+++VSVKG+NTQWL +SRNWGQNWQSN+ LVGQ+LSFRV  SD R+STS N+AP+NWQFGQT+SGKN
Sbjct:  155 RRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKN 255          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.903e-45
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = -1
Query:  402 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKN 704
            RRV CRK GGIRFTING RYFNLVL+TNVAGAGDI R SVKG+ T W+S++RNWGQNWQSN+ LVGQ+LSFRVT SDRRTSTSWN+AP+NWQFGQTF GKN
Sbjct:  157 RRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKN 257          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV CR++GGIRFTING  YFNLVL+TNVAGAGD++ VS+KG NT+W SMSRNWGQNWQSN++L GQALSF+VT SD RT  S N  P NW FGQT++GK
Sbjct:  150 RRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGK 249          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRVPC +RGGIRFTING  YFNLVLVTNV GAGD+  V+VKG+ T+W  MSRNWGQNWQSN+ L GQALSF+VT SD RT  S N+APA+W FGQTF+G+
Sbjct:  151 RRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGR 250          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.919e-37
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPCR+RGGIRFTING  YFNLVL+TNV GAGD+   ++KG+ T W +MSRNWGQNWQSNS L GQALSF+VT SD RT  S+N APA W +GQTF+G
Sbjct:  147 RRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAG 245          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.013e-36
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC K+GGIRFTING  YFNLVLVTNVAG GD+  VS+KG++T W  MSRNWGQNWQSNS L GQ+LSF+V  SD RT TS NV PA WQFGQTF G
Sbjct:  150 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEG 248          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ORYSJ8.712e-4886.14Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH1.138e-4786.14Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA6_ARATH1.941e-4785.15Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH8.154e-4684.16Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH5.285e-4580.20Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP16_ARATH6.903e-4581.19Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP14_ARATH2.809e-3872.00Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP15_ARATH2.378e-3772.00Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH6.919e-3770.71Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA2_ORYSJ2.013e-3673.74Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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