DN617673

Overview
NameDN617673
Unique NameDN617673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:29..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 1.922e-71
Identity = 132/192 (68.75%), Postives = 159/192 (82.81%), Query Frame = 3
Query:   45 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPS-FVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDL 614
            +NK+VI  ++V+GFPKESD   T+ +++L+V EGSK +VL+KNLYLSCDPYMR RM K D  S    ++ PG+PI GYGV++V++S HP+Y K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDL
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDL 193          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.523e-68
Identity = 126/193 (65.28%), Postives = 156/193 (80.83%), Query Frame = 3
Query:   45 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLD--RPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDL 614
            +NK+VIL +YV+GFP ESD   T+ +++L+V EG+ ++VL+KNLYLSCDPYMR RM K D    +   ++ PG+PI GYGV+++++S HP+Y K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDL
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31
Identity = 78/191 (40.84%), Postives = 110/191 (57.59%), Query Frame = 3
Query:   33 QEAVSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK 605
            Q+   N+R +L++   G P   + ++        VA   +  VLL+ +YLS DPYMR RMS  D PS+      G  + G  V++V++S HP+Y   D V G +GW++Y + +   L+    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK
Sbjct:    3 QQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.255e-30
Identity = 81/190 (42.63%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   45 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVL-DSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVD 611
            S +++ L+    G P   D +  +    + V E  +  VL+K LY+S DPYMR RM   D  S+V+ F   + ++G  +A+V+ D  H    K D+V G+  W+E+S V+   L  KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAVSESALR-KIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKID 184          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 83/196 (42.35%), Postives = 109/196 (55.61%), Query Frame = 3
Query:   42 VSNKRVILSNYV---TGFPKESD-MKITSGSIKLKVAEGSKDT-VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHT-DVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEK 605
            VSN  VI+  Y+    G+P   + +        L+ A+  ++T VLLKN+Y S DPY+R RM      S++     G+P     VAKV+ ST   Y     V   +GWEEY+ V+   L  L  I +   +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVD 611
            V  K   L  +  G P +SD ++ +    +++   +   VLL+ L+LS DPYMR    +L           G+ + G  VA+V++S +P +    LV   +GW  +S+    QL  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVD 180          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 78/192 (40.62%), Postives = 105/192 (54.69%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ L+L+ DPYMR    +L           G+ + G  VAKV++S +    K  +V  S GW  +S+     L  L+      +PLS   G +GMPG+TAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGE-----VLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV 179          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.473e-27
Identity = 80/194 (41.24%), Postives = 107/194 (55.15%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEG---SKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  GFP       T G+ +LK  E    +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  + K  +V    GW  +S+     L  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    2 VQAKSWTLKKHFEGFP-------TDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.883e-26
Identity = 78/192 (40.62%), Postives = 109/192 (56.77%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ LYL+ DPYMR  M+K        S   G+ + G  VA+V++S +  +    +V   +GW  +S+    +L  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKTVELPPLKDGE-----VLLEALYLTVDPYMRI-MAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of DN617673 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.594e-25
Identity = 77/192 (40.10%), Postives = 104/192 (54.17%), Query Frame = 3
Query:   42 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKV 608
            V  K   L  +  G P +SD ++ +  +  LK  E     VLL+ L+LS DPYMR    +L           G  + G  VA+V++S +  +    +V   +GW  + +     L  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGE-----VLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI 179          
The following BLAST results are available for this feature:
BLAST of DN617673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH1.922e-7168.75Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.523e-6865.28Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YNCB_ECOLI1.944e-3140.84Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU6.255e-3042.63Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO1.067e-2942.35Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RABIT9.032e-2939.58Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_HUMAN1.703e-2740.63Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_MOUSE6.473e-2741.24Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN1.883e-2640.63Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_CAVPO1.594e-2540.10Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617673 ID=DN617673; Name=DN617673; organism=Citrus sinensis; type=EST; length=614bp
AGAAAAAAAACTGAGAAACAATGGCGGCTGAACAAGAAGCTGTGAGCAAT
AAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTCCAAAAGAATCAGA
CATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTAGCAGAGGGTTCAA
AAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTGTGATCCTTACATG
CGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTGTTGATTCATTCCA
TCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAAGTTTTGGATTCTA
CACATCCAAATTATGCAAAAGATGACTTGGTTTGGGGCTCCACCGGGTGG
GAGGAGTACAGTCTCGTTACAGCCCCACAGCTTTTGATTAAAATTCAGCA
TACAGATGTGCCCCTTTCATACTATACTGGAATCCTTGGTATGCCTGGTG
TGACTGCATACGCTGGTTTATACGAAGTTTGCTCTCCGAAGAAAGGTGAG
TACGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTTGTTGGCCA
ATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAAGCAAAG
AAAAGGTCGATTTG
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