DN617670

Overview
NameDN617670
Unique NameDN617670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1638 contig Csv1_Contig1638:18..414. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.623e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = -2
Query:  214 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 366
            MPSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -2
Query:  214 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 366
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -2
Query:  214 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 366
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = -2
Query:  214 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 366
            MPSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.328e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  220 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 366
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.328e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  220 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 366
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  217 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 366
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  217 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 366
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  217 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 366
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of DN617670 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  217 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 366
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
The following BLAST results are available for this feature:
BLAST of DN617670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL391_ARATH7.623e-2494.1260S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL39_ORYSJ9.955e-2496.0860S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE9.955e-2496.0860S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL392_ARATH2.452e-2290.2060S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR4.328e-1981.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY4.328e-1981.6360S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT1.818e-1778.0060S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE1.818e-1778.0060S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]
RL39_ICTPU1.818e-1778.0060S ribosomal protein L39 OS=Ictalurus punctatus G... [more]
RL39_HUMAN1.818e-1778.0060S ribosomal protein L39 OS=Homo sapiens GN=RPL39... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617670 ID=DN617670; Name=DN617670; organism=Citrus sinensis; type=EST; length=397bp
TTTTTTTTTTTTTTTTTAAACAAGTCAAATTTCATAAGTCCAAATTAACT
CAAGAGGGCACAAAATAAAATAAGGACTCTCAATGAGTTCCTTATACAAA
TGAGTTTCTCAAAACTAAATATAAAACATAAGGCCAGGTATCATAGTCTA
AATTACTCGAACATAAGCTTAAAACAAACTCAACAACAAATCCATCTGAT
CCTAAACACCTTAGAATCCAAGCTTTGTGCGGCGCCAGTGCCTGCGCTTT
GCGTTGTATCTGATGGTGTTGTCGGTGCGCATACGGATCCAGTGAGGGAT
GGGCCTGTTTTGCCTCATCTTCTTGGCAAGCTTCTTCTTGATCATAAATG
TCTTGTGTGACGGCATTTTCGCTTCTTAGTTCGATCGGCTGCAGCGA
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