DN617658

Overview
NameDN617658
Unique NameDN617658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617658_ssr648 microsatellite DN617658_ssr648:648..659. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig97 contig Csv1_Contig97:16..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 91/124 (73.39%), Postives = 107/124 (86.29%), Query Frame = -2
Query:  277 MALRRAVLDHVRVPVQTLALTGSKQRWSVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 648
            MALR A+L H+RVPVQTL L  SK  +  LG++R  SSHDDHL++E V+DRVL VVK FPKVDPS+VTP+VHFQ DLGLDSLD VEIVMA+EEEFKLEIPDKEA +ID+C+LAIEY+YNHPM+S
Sbjct:    1 MALRNAILRHLRVPVQTLGLNQSKIGF--LGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMSS 122          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  277 RRAVLDHVRVPVQTLALTGSKQRWSVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCFPKV-DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 639
            R AV   VR  V   A   +  + +   ++RF S+   HL K+EV  R+  V+  F KV DP  +T   HF  DLGLDSLD VE+VMA+EEEF +EIPDK+A +I + + A+EYI + P A+
Sbjct:   14 RPAVASAVRAGVARPAFVQAVPKVAAFQAVRFYSA-GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDAN 134          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_CYAME (Acyl carrier protein OS=Cyanidioschyzon merolae GN=acpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  289 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 522
            +T+++++D+V S+V     V+ SQ++P+  F  DLG DSLDNVE+VMA+EEEF LEIPD  A +I     A++YI  H
Sbjct:    1 MTEQQILDKVQSIVSEQLGVERSQISPNASFTHDLGADSLDNVELVMAMEEEFDLEIPDSAAEQITTIQQAVDYILQH 78          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_YEAST (Acyl carrier protein, mitochondrial OS=Saccharomyces cerevisiae GN=ACP1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  277 RFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPS----QVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 549
            RF S++   L+K++V  RV+ V+K F K  P+    Q++ D  F KDLGLDSLD VE+++A+EEEF +EIPDK A  + +    ++YI ++P A+
Sbjct:   34 RFYSAN---LSKDQVSQRVIDVIKAFDKNSPNIANKQISSDTQFHKDLGLDSLDTVELLVAIEEEFDIEIPDKVADELRSVGETVDYIASNPDAN 125          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  280 LRFMSSHDDHLTKEEVIDRVLSVVKCFPKV-DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 552
            LRF S     + + +   R+L VV  F K+ DP +VTP   F  DLGLDSLD VE+VMA+EEEF ++IPDK+A  I +   AI YI  +P A
Sbjct:   25 LRFYS-----VARPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEA 111          
The following BLAST results are available for this feature:
BLAST of DN617658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ACPM_ARATH7.480e-4673.39Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR9.208e-2045.08Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACP_CYAME1.165e-1448.72Acyl carrier protein OS=Cyanidioschyzon merolae GN... [more]
ACPM_YEAST1.521e-1444.21Acyl carrier protein, mitochondrial OS=Saccharomyc... [more]
ACPM_PONPY1.987e-1450.67Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.987e-1450.67Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_HUMAN1.987e-1450.67Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.987e-1450.67Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.987e-1450.67Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO2.595e-1448.91Putative acyl carrier protein, mitochondrial OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617658 ID=DN617658; Name=DN617658; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGCATCTCAAAGGAGGACAATGATAAAATGTCAC
CAGATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGA
CGTCATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTG
GATTATTTTCCATCTACCTTACAGAGATTATATGCAAAGCCTACAAAAAA
CAGGGTAAAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAA
GAAGAAAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGAT
GTACTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAG
GGATTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTG
TCCAAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCAC
CTGGGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGT
CAATGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGC
AGAGAACCTAACACACTCCATCGCTGTTTGGATCCGGTTAAGGCTAGGGT
TTGTACTGGTACTCGAACGTGGTCAAGCACAGCTCTTCTCAATGCCATCT
CTCTCTCTCTGCTCTTTTGGCTA
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