DN617650

Overview
NameDN617650
Unique NameDN617650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.972e-41
Identity = 84/119 (70.59%), Postives = 96/119 (80.67%), Query Frame = -3
Query:  285 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPWD 641
            GESE FLQKAIQEQGRGR+LDTINEIQERHDAVK +EKNL+ELHQVFLDMAVLV+ QG QLDDIES V RA+S++RGGT++LQTAR YQ +TRKWTCIA               +KPW+
Sbjct:  192 GESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITVVVLAVLKPWN 310          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.057e-38
Identity = 83/119 (69.75%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  285 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPWD 641
            GESETFLQKAIQEQGRGRILDTINEIQERHDAVK +EK+L ELHQVFLDMAVLV+ QG QLDDIE  V+RANS VR G +RL  AR YQ +TRKWTC A               VKPW+
Sbjct:  191 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFAILLLLIIVVLIVVFTVKPWE 309          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = -3
Query:  345 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 641
            GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV++QG+QL+DIES V +A+S+VR GT++LQ AR+YQ S+RKWTC A
Sbjct:  181 GESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYA 279          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.292e-36
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = -3
Query:  345 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 641
            GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV+AQG+QL++IES V +A+S+VR GT++LQ AR+YQ S+RKWTC A
Sbjct:  176 GESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTCYA 274          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.211e-31
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = -3
Query:  345 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIA 641
            GESE FLQKAIQEQGRG+++DT++EIQERHD VK +E++L ELHQVFLDMA LV+AQG  L+DIES V +A+S+V  GT++L  A+  Q + RKW CIA
Sbjct:  184 GESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWACIA 282          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.813e-29
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = -3
Query:  288 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPW 641
            G SE   QKAIQEQGRG+++DT+ EIQERHDAV+ LEK L +L Q+FLDMAVLV AQGE LD+IESQV  A  +V+ G   LQ A+  Q ++RKW CIA               +KPW
Sbjct:  182 GNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPW 299          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.427e-28
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = -3
Query:  288 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXXXXXXXVKPW 641
            G+SE   QKAI+EQGRG+I+DT+ EIQERHDAV+ LEK L +L QVFLDMAVLV AQGE LD+IE+ V  A  +V+ G  +L  A K Q S+RKW CIA               +KPW
Sbjct:  183 GDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPW 300          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.015e-26
Identity = 54/95 (56.84%), Postives = 75/95 (78.95%), Query Frame = -3
Query:  348 ETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCI 632
            E FL +AIQE G+G++L+T+ EIQ+R+DA K +EK+L ELHQVFLDMAV+V++QGEQ+D+IE  V  A+ YV  G   L+TA+ +Q ++RKW CI
Sbjct:  193 EEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMCI 287          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.898e-14
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  357 QERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKW 563
            +ERH+AV  ++++L  LHQVFLDMAVLV+ QG+++DDIE+ V  A S+V GGT  L  A + +  T+ W
Sbjct:  214 KERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSW 282          
BLAST of DN617650 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  360 GESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRK 641
            G S  F Q  I E  + +   T+ +I+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV+  T+  + A KYQ   R+
Sbjct:  175 GNSSVFTQGIIMETQQAK--QTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266          
The following BLAST results are available for this feature:
BLAST of DN617650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SY121_ARATH2.972e-4170.59Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH1.057e-3869.75Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH7.574e-3775.76Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH1.292e-3675.76Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH6.211e-3164.65Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY132_ARATH5.813e-2955.08Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH6.427e-2855.08Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY111_ARATH6.015e-2656.84Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
SY112_ARATH6.898e-1450.72Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
STX1A_DROME2.219e-1239.36Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617650 ID=DN617650; Name=DN617650; organism=Citrus sinensis; type=EST; length=643bp
GAAAAATATTAGATACAATGAAAAAATACACAAAAGTAGCATCCAACATA
TAATATACATGCAACAAAACCAAAATACTAGGTACAAAAAAGAATATAGA
AACGCATATGACTAAGCTCAACTGTCTCACTCACCCCCATCAAATCTCAA
CTGTTCAAAAGCAATTAAATCCAGCTAAAATAAGGCATAATGAAATCCTA
AGGCTGAGCTTAGGATGGCGGAGTTTGTGCCTGAGGCGTTGGATTCTGCG
GACTACTACCACCACCACCATTGCCACCACCATTGTCCCATGGTTTCACA
GTGAACAACACCACAAACAGGATTATGATTAGCAATATTGTGATGGCGAT
ACAGGTCCATTTTCGGGTACTTAGCTGATACTTCCTGGCTGTTTGCAATC
TCTCAGTCCCGCCTCTGACATATGAATTAGCTCGTTGCACCTGGCTCTCA
ATGTCATCCAATTGTTCACCTTGGGCCTGGACCAATACTGCCATGTCTAG
GAAAACTTGGTGCAATTCCTGAAGATTTTTCTCCAGCACTTTCACGGCAT
CATGCCTCTCTTGTATCTCATTTATGGTGTCCAAAATTCTTCCCCTTCCT
TGCTCCTGAATTGCTTTCTGCAAGAATGTTTCACTCTCTCCAG
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