DN617633

Overview
NameDN617633
Unique NameDN617633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5738 contig Csv1_Contig5738:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_ARATH (Mannose-P-dolichol utilization defect 1 protein homolog OS=Arabidopsis thaliana GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.591e-54
Identity = 95/154 (61.69%), Postives = 126/154 (81.82%), Query Frame = -1
Query:  236 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQ 697
            V+  TI L Y + K +PFSA+GE+ F+LIQ LILVA  YY+SQP+   TW++A+LY AIAPT+ AG+I+P LFE +YA +H+ FLSAR+PQIWKNF+NKSTGQLSFLTCLM+FGGA+ RVFTSIQEKAP ++++G  +    NGI++SQ++LY+
Sbjct:   71 VIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTWVKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFLSARIPQIWKNFRNKSTGQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTNGIIMSQILLYR 224          
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_HUMAN (Mannose-P-dolichol utilization defect 1 protein OS=Homo sapiens GN=MPDU1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 44/154 (28.57%), Postives = 79/154 (51.30%), Query Frame = -1
Query:  239 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 697
            +VA T  + YSI    PFS++GE  F+++Q + +  +  +Y     T   +  L    +   +L   + P+   T+    ++   +  R+ Q   N+ N  TGQLS +T  + FGG++ R+FTSIQE     +     + +L NG++ +Q++ Y
Sbjct:   83 LVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQ--TVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFY 234          
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_DROME (Mannose-P-dolichol utilization defect 1 protein homolog OS=Drosophila melanogaster GN=CG3792 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = -1
Query:  239 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINP--VLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 697
            ++A +  L Y+   G PFSA+G+  F+ IQ + +  +  +++     +     L+   +   +L   + P  VLF TI +C     L  ++ Q + N++  STGQLS  T +M F G++ R+FTSIQE     +++        N ++L Q+I Y
Sbjct:   78 LLAISFHLSYNFMHGYPFSAWGDSTFLAIQTVTIAVLVLFFNGRKAQSGLF--LVGYVVLMYVLNSGLTPMSVLF-TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSIQETGDFMIILTFIASTFANSVILGQLIYY 229          
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_MOUSE (Mannose-P-dolichol utilization defect 1 protein OS=Mus musculus GN=Mpdu1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 44/154 (28.57%), Postives = 79/154 (51.30%), Query Frame = -1
Query:  239 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 697
            +VA T  + YSI    PFS++GE  F+ +Q + +  +  +Y     T   +  L   A+    L   + P+   T+    ++   +  ++ Q   N++N  TGQLS +T  M FGG++ R+FTS+QE     +     + +L NG++ +Q++ Y
Sbjct:   83 LVALTGTVVYSITNNFPFSSWGEALFLTLQTVAICFLVMHYRGE--TVKGVAFLACYAMVLLALLSPLTPLAVVTLLQASNVPAVVVGKLLQAATNYRNGHTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLIAAQVLFY 234          
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_CRIGR (Mannose-P-dolichol utilization defect 1 protein OS=Cricetulus griseus GN=MPDU1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = -1
Query:  239 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYC-AIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 697
            +VA T  + YSI    PFS++GE  F+ +Q + +  +  +Y    G      ALL C A     L   + P+   T+    ++   +  ++ Q   N+ N  TGQLS +T  M FGG++ R+FTS+QE     +     + +L NG++ +Q++ Y
Sbjct:   83 LVALTGTVIYSITNNFPFSSWGEALFLTLQTITICLLVLHYR---GDTVKGVALLACYATLLLALLSPLTPLAVVTMLQASNVPAVVVGKLLQAATNYHNGHTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLIAAQVLFY 234          
BLAST of DN617633 vs. ExPASy Swiss-Prot
Match: MPU1_CAEEL (Mannose-P-dolichol utilization defect 1 protein homolog OS=Caenorhabditis elegans GN=F38E1.9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 38/153 (24.84%), Postives = 81/153 (52.94%), Query Frame = -1
Query:  239 VVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 697
            +V A     YS + G  FS +G+ FF+ +Q +I++   + +S     +     ++  A+A  +++  I       +        + +++ QI +N++ +STGQLS ++  + F G + RVFTS+Q+     +++  +  A++NG++ +Q  +Y
Sbjct:   74 LVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSGQTMLSVGFLGIV-SAVAYGVVSKSIPMQTLTAVQTAGIPIVVVSKLLQISQNYRAQSTGQLSLISVFLQFAGTLARVFTSVQDTGDMLLIVSYSTAAVLNGLIFAQFFMY 225          
The following BLAST results are available for this feature:
BLAST of DN617633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MPU1_ARATH3.591e-5461.69Mannose-P-dolichol utilization defect 1 protein ho... [more]
MPU1_HUMAN6.197e-1428.57Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_DROME1.381e-1329.68Mannose-P-dolichol utilization defect 1 protein ho... [more]
MPU1_MOUSE3.076e-1328.57Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_CRIGR6.852e-1330.32Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_CAEEL2.604e-1224.84Mannose-P-dolichol utilization defect 1 protein ho... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617633 ID=DN617633; Name=DN617633; organism=Citrus sinensis; type=EST; length=697bp
TTTTTGTATCACCTTCTCTTTATTTTGTATTTAAGATTAAAGCAAGCTGG
ACCAACACCAAACACAACTTAAATTAAGTTTAAACCATTACATAATGGCA
GAATGATAACACCTTGGCCCGGTAATGACGGCTCACTTGCCAAACCTGTC
GAACCTCGTGGTGTCAGCAGAGCAAACCTACCTATAGCCTGTTCTCCTTT
TACTCATCTTTCTTCTCTTTCTTATCTTCAGGTTTTTGGTATAAAATCAT
CTGACTCAGGACGATCCCATTCATCAAGGCACCCATTGTAGAGCCCATAA
CAACATTTGTTGGAGCTTTTTCTTGGATGCTTGTAAAAACTCTCACCATG
GCACCACCAAAACTCATGAGACATGTCAAGAAGCTGAGCTGTCCGGTACT
TTTGTTTTTAAAGTTCTTCCATATTTGAGGGACCCTGGCAGATAAAAATG
TGATATGCTGGCATGCATATATAGTTTCAAAAAGAACGGGATTAATTTGA
CCAGCTAAAATGGTTGGTGCTATAGCACAATATAGCAGTGCCCTGATCCA
CGTTGCGGTACCAACTGGTTGTGAATAGTAGTAAGTTATAGCAACTAAAA
TTAATCCTTGGATCAAAATAAAGAACACCTCCCCATAAGCTGAAAAGGGA
ATCCCTTTCTGAATAGAATACCCCAGACCAATAGTGGCCGCAACTAC
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