DN617600

Overview
NameDN617600
Unique NameDN617600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:321..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 8.898e-77
Identity = 136/161 (84.47%), Postives = 147/161 (91.30%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDM 484
            ADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+PLGGT++EQPFAI      YLYGFFDQAWK+ MTKEEAEQLVVKAVSLAIARDGASGGVVRTV INSEGV+R FYPGD L LWHEELEPQNSLLD+
Sbjct:   62 ADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDI 222          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 2.423e-74
Identity = 134/161 (83.23%), Postives = 145/161 (90.06%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDM 484
            ADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+P GGT++EQPFAI      YLYGFFDQAWKEGMT+EEAE+LVV AVSLAIARDGASGGVVRTVTIN +G +RKFY GD+L LWHEELEP NSLLD+
Sbjct:   63 ADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTINKDGATRKFYSGDSLQLWHEELEPVNSLLDV 223          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHE 451
            AD+Q +SDYVRY+L  HT +L     VK AA+L +LL Y+NKN L  G+IV GWDK++GG +Y + LGG++++QPFAI      Y+YG+ D  +K  MTK+E  + V  +++LA+ RDG+SGGV+R   I+  GV RK  PG+ LP + E
Sbjct:   64 ADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIIDKNGVERKMIPGNNLPRFWE 213          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.540e-33
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 439
            AD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ QPFAI      Y+YG+ D  ++EGMTKEE  Q    A++LA+ RDG+SGGV+R   I   GV R+   GD +P
Sbjct:   84 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQIP 229          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.623e-33
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 433
            AD+QTV+D ++Y+L  + IQ G   +V  AA L   + Y NKN L  G+IV G+D+  GG +Y +PLGG++ +QP AI      ++YGF D  ++E MT+EEA + +  AV+LA+ RDG+SGG +R V +N +G+ RKF+  DT
Sbjct:   74 ADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMERKFFAIDT 217          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 137.887 bits (346), Expect = 2.295e-32
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 439
            AD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTKEE  Q    A++LA+ RDG+SGGV+R   I   GV R+   GD +P
Sbjct:   84 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 229          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 439
            AD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++LA+ RDG+SGGV+R   I   GV R+   GD +P
Sbjct:   83 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVERQVLLGDQIP 228          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 439
            AD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y VP+GG ++ Q FAI      Y+YG+ D  ++EGMTK+E  Q    A++LA+ RDG+SGGV+R   I   GV R+   GD +P
Sbjct:   83 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 228          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.914e-32
Identity = 65/151 (43.05%), Postives = 98/151 (64.90%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   ++V GWD++EGG++YG  +GG +I QPFAI      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI ++GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTITADGVDHRVILGDELPKFYDE 219          
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.139e-31
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I  EGV     PGD LP +H+E
Sbjct:   67 ADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFHDE 217          
The following BLAST results are available for this feature:
BLAST of DN617600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSB6_ARATH8.898e-7784.47Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC2.423e-7483.23Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_DICDI3.655e-3848.67Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_BOVIN3.540e-3345.21Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB6_SCHPO4.623e-3345.14Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_HUMAN2.295e-3244.52Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_RAT2.997e-3243.84Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE2.997e-3243.84Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB9_RAT3.914e-3243.05Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PB6LB_SALSA1.139e-3143.05Proteasome subunit beta type-6-B like protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617600 ID=DN617600; Name=DN617600; organism=Citrus sinensis; type=EST; length=486bp
TGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAAC
ACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTT
GTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGAT
TGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATATATGGAGTTCCTC
TTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCA
AGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAA
GGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGC
GTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATTCTGAA
GGAGTGAGCAGAAAGTTCTACCCTGGCGACACACTTCCATTGTGGCATGA
GGAGTTGGAGCCGCAAAATTCGTTGCTGGACATGAT
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