DN617586

Overview
NameDN617586
Unique NameDN617586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13835 contig Csv1_Contig13835:115..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617586 vs. ExPASy Swiss-Prot
Match: PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.786e-79
Identity = 146/192 (76.04%), Postives = 167/192 (86.98%), Query Frame = -2 
Query:  222 KLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 791
            KL+ CVEK+  KLG VVK+L+EEQ+ E G FKKEA+EL +SI  DVKKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT  AAK+WLESR S   V A
Sbjct:  497 KLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 688
[Close]
BLAST of DN617586 vs. ExPASy Swiss-Prot
Match: PP420_ARATH (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 70/182 (38.46%), Postives = 112/182 (61.54%), Query Frame = -2 
Query:  246 KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 791
            K++ C+E++N KL   V L+++E+      K+E   + N+   + ++ +CNCLID+C   N  E A +LL LG    +Y  + +++  +WSL ++SLS+GAA TAL  W+  L+  ++  EE P L    TG G H++S +GLA+ F  HL++L+APF  S D+ G F+ T+    SWLES+
Sbjct:  523 KVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESK 702
The following BLAST results are available for this feature:
BLAST of DN617586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP314_ARATH1.786e-7976.04Pentatricopeptide repeat-containing protein At4g16... [more]
PP420_ARATH5.825e-3038.46Pentatricopeptide repeat-containing protein At5g46... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617586 ID=DN617586; Name=DN617586; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTTACATTTCCATAATTTCATTAGCTCTATATATAA
AAATTCAAAGTATAAACAAAAGTTATGGTCTAATAGAACAAAAATTCTTC
CTCCGTCAAGAGACATATAGCCCAGAACATAAAAAAAAGGGGAGTTTGAG
ATGGTGAGCACATCATTGCTAAGCATACAACCTGATTCAGGAATGCCAGA
CACTTACGAGGCAGTCACCTTGGCAGGAACTGAGACCAGTGAGCTTCTAG
ACTCCAACCATGACTTGGCTGCAGCCTCTGTAGTCAAAAACCAGCCAACC
TTGTCTGGGGAATCATGAAAAGGGGCATTTAATTCCTTCAAATGTGACTC
GAAAACACTAGCTAATCCTTTGTCTGAGTACTTGTGTTTCCCGTGCCCAG
TATTGATACCAAGTAATGGCGGAAACTCTTCTCCAGATTCCAGCGCTTTC
GACAGGTCATTTATCCAAATGTGTAATGCAGTCAGTGCTGCTCCAAGCGA
GAGGCTCTTCAGATGTAAAGACCACTGAGTTGGAGACCTGGATTGTATAT
CTGTGTAAACCTCCAGTGTAAGCCCCAGTTCTAAAAGCTTACATGCATTT
TCCAACAGATTAAGATTGACACAGAGATCAATTAAGCAATTGCAGTAAGC
CTTTTTGACGTCTTTGCTAATTGAATTAAAGAGTTCAGTTGCTTCCTTTT
TGAAATCCCCTTCAATGTCTTGCTCCTCCAATAGAAGCTTCACCACATAC
CCCAGCTTTGAATTGGACTTTTCAACACATTCAACAAGCTTA
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