DN617578

Overview
NameDN617578
Unique NameDN617578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5071 contig Csv1_Contig5071:178..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.242e-85
Identity = 160/234 (68.38%), Postives = 180/234 (76.92%), Query Frame = 2
Query:   77 RFGKGASSCDDXXXXXXXXXXXXXXXRPDYLDHEIAQLTKLRSQPHEFLSRTAPGKLRLPVSTVKMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            RFGK  S+CD                  +  DHEIAQLTK RS+PH+ LS+  PGK RL VST+KMLVGRE N+SGRGRFS+AD CHVLSRYLP+NGPW VD   S  Y SQFSNDG FFVA  Q  +I++YNVDK WK+QKDI TK+LRWTITDTSLSPDQR+LVYAS+  IVNIV+VGSS  ESLANVTEIH+GLDFS  GDEDEFGIFSV+FSTDG+ELVAA  D  IYVY
Sbjct:    6 RFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGLFFVAGFQGGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVNVGSSMTESLANVTEIHEGLDFSVGGDEDEFGIFSVRFSTDGRELVAASRDASIYVY 239          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.090e-69
Identity = 133/205 (64.88%), Postives = 156/205 (76.10%), Query Frame = 2
Query:  167 LDHEIAQLTKLRSQPHEFLSRTAPGKLRLPVSTVKMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            LDHEIAQLT+LRS PHE LSR    K  LP+ST+KML GRE N SGRGRFS+AD CHV+SR+LPVN P  VD M SRVY SQFS DGS F+A  Q  +I++YNVDK WK+Q DI  K +RWTITD SLSPDQ+FL YAS+  I +IV  GS+A ES ANVT+IH GLDFS++ D    FG+FS+KFSTDG+E+VA  SD  I VY
Sbjct:   37 LDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQFSTDGSLFIAGFQGCHIRIYNVDKGWKVQNDIIAKCVRWTITDASLSPDQKFLAYASLTPIAHIVKFGSAATESHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSDESICVY 241          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 46/171 (26.90%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  269 KMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            +ML  RE     RG FS  +   V+S +LP N     D  + + +   +S DG  F++A Q+  I++Y+     ++  K I+ + + W++ D + +PD    +Y+S    ++I ++            + H  LD   D  E  F +FS+  S+DG+E++   +D  +YV+
Sbjct:  133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG--------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVF 292          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 46/171 (26.90%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  269 KMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            +ML  RE     RG FS  +   V+S +LP N     D  + + +   +S DG  F++A Q+  I++Y+     ++  K I+ + + W++ D + +PD    +Y+S    ++I ++            + H  LD   D  E  F +FS+  S+DG+E++   +D  +YV+
Sbjct:  133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG--------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVF 292          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 2
Query:  221 LSRTAPGKLRLPVSTVKMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            L RTA     L  S  +ML  RE     RG FS  +   V+S +LP N     D  + + +   +S DG  F++A Q+  I++Y+     +   K I+ + + W++ D + +PD    +Y+S    ++I ++            + H  LD   D  E  F +FS+  S+DG+E++   +D  +YV+
Sbjct:  122 LRRTA-----LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG--------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVF 292          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 49/185 (26.49%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  227 RTAPGKLRLPVSTVKMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            R   G+     S  +ML  RE     RG FS  +   V+S +LP N     D  + + +   +S DG  F++A Q+  I++Y+     +   K I+ + + W++ D + +PD    +Y+S    ++I  +            + H  LD   D  E  F +FS+  S+DG+E++   +D  +YV+
Sbjct:  119 RLGLGRTAQEHSFPRMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICSIYGEG--------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVF 292          
BLAST of DN617578 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 48/199 (24.12%), Postives = 96/199 (48.24%), Query Frame = 2
Query:  185 QLTKLRSQPHEFLSRTAPGKLRLPVSTVKMLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 778
            + +++++Q      R    +    +S  +ML  RE     +G FS  +   V+S +LP N     D  + + +   +S DG  F++A Q+  I++Y+     ++  K I+ + + W++ D + +PD    +Y+S    ++I ++            + H  LD   D  E  F +FS+  S+DG+E++   +D  +YV+
Sbjct:  105 ECSEIKTQVELATGRLGLRRAARELSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG--------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVF 292          
The following BLAST results are available for this feature:
BLAST of DN617578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LE14B_PRUAR1.242e-8568.38LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
LE14B_LITER8.090e-6964.88LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
DCA11_HUMAN5.694e-1426.90DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_PONAB7.437e-1426.90DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_MOUSE2.164e-1327.81DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_RAT2.826e-1326.49DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_BOVIN2.826e-1324.12DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617578 ID=DN617578; Name=DN617578; organism=Citrus sinensis; type=EST; length=780bp
GGTAAACTCTGATTCAAGGTTAGCTAAGTTATAGTTGATGTTCATAGAAT
CGTCATAACTGATATCCAATATGGGGAGGTTTGGCAAGGGTGCTAGTTCT
TGTGACGATGGATATGCCTCTAGTAGTGGTTCTTTGAGTCAAGGAGGCAA
CGGGCGACCTGATTATCTTGATCATGAAATTGCTCAACTCACAAAGCTTA
GGTCGCAGCCCCATGAATTCTTAAGTAGGACTGCCCCTGGAAAGTTGAGA
TTGCCAGTTTCAACTGTGAAAATGTTGGTTGGTAGGGAAGTCAATTATTC
GGGTAGGGGTAGATTCTCGGCAGCGGATAGTTGTCATGTTTTAAGCCGGT
ATTTGCCCGTTAATGGTCCTTGGAAGGTAGATGGGATGAATTCTCGCGTC
TACACTTCGCAATTCTCTAATGACGGTTCCTTTTTTGTTGCTGCATCTCA
GGAAAGCAACATTAAGGTATATAATGTTGATAAAAATTGGAAAATTCAGA
AGGATATTGAAACCAAAGCCTTGAGATGGACAATTACTGATACATCTCTA
TCACCAGATCAACGTTTTCTTGTTTATGCCAGTATATGTGCCATTGTTAA
TATTGTAGATGTTGGATCCAGTGCTAGAGAGTCACTTGCAAATGTTACGG
AGATCCACAAGGGGTTAGATTTTTCTGCTGATGGAGATGAGGATGAATTT
GGGATCTTTTCTGTAAAATTTTCAACTGATGGGCAGGAGCTTGTTGCAGC
AGGAAGTGATAATTTCATATATGTTTATGA
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