DN617577

Overview
NameDN617577
Unique NameDN617577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10346 contig Csv1_Contig10346:237..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617577 vs. ExPASy Swiss-Prot
Match: BPL1_MOUSE (Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.365e-13
Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = -3
Query:  147 GIGLNVNNEEPTTCLNAVLRKLSDS----TYQFQREDVIAAFFNKFETFYDTFINQGFQSLEELYYKTWLHSGQRVIIQEKNEDQVVENVVTIQGLTSSGYLLAMGDDNQMCELHPDGNSLDFFKGLIRRKLQ 533
            G G NV N  PT C+N ++ + +          + + +IA      E   D F +QG   +  LYYK W+H GQ+V +      Q      +I GL  SG+L    +D  +  +HPDGNS D  + LI  K Q
Sbjct:  595 GCGFNVTNSNPTICINDLIEEHNKQHGAGLKPLRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWVHGGQQVRLGSTEGPQA-----SIVGLDDSGFLQVHQEDGGVVTVHPDGNSFDMLRNLIVPKRQ 722          

HSP 2 Score: 22.7126 bits (47), Expect = 3.365e-13
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = -1
Query:  554 IKVGGILCTSTYRTKKFNVSIG 619
            +K+GG+L  ST   + F + IG
Sbjct:  574 MKIGGVLVNSTLMGETFYILIG 595          
BLAST of DN617577 vs. ExPASy Swiss-Prot
Match: BPL1_SCHPO (Biotin--protein ligase OS=Schizosaccharomyces pombe GN=bpl1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.606e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = -3
Query:  153 GIGLNVNNEEPTTCLNAVL---RKLSDSTY--QFQREDVIAAFFNKFETFYDTFINQGFQSLEELYYKTWLHSGQRVIIQEKNEDQVVENVVTIQGLTSS-GYLLA--MGDDNQ----MCELHPDGNSLDFFKGLIRRK 533
            G G+NV+N  PT  LN ++    K SD+    +F  E ++A+  N+F+ ++   + +GF  +   YY+ WLHS Q V +    +         IQG+TS  G+LLA  + ++N+    +  L PDGNS D  + LI RK
Sbjct:  499 GCGINVSNLGPTVSLNTLVDEWNKNSDNPRLEKFSFEKLLASVLNQFDRYHRLLLEEGFSLILPEYYQYWLHSNQTVNLASGGK-------AIIQGITSDFGFLLAQLLNENNEPTTKVVHLQPDGNSFDLMRNLITRK 630          

HSP 2 Score: 21.9422 bits (45), Expect = 9.606e-13
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = -1
Query:  554 IKVGGILCTSTYRTKKFNVSIG 619
            +K+ GI+ TS YR    ++ +G
Sbjct:  478 MKLSGIIVTSNYRKNVLHLVVG 499          
BLAST of DN617577 vs. ExPASy Swiss-Prot
Match: BPL1_HUMAN (Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.533e-12
Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = -3
Query:  153 GIGLNVNNEEPTTCLNAVLRKLSDS----TYQFQREDVIAAFFNKFETFYDTFINQGFQSLEELYYKTWLHSGQRVIIQEKNEDQVVENVVTIQGLTSSGYLLAMGDDNQMCELHPDGNSLDFFKGLIRRK 533
            G G NV N  PT C+N ++ + +          + + +IA      E     F ++G  S+  LYY+ W+HSGQ+V +      +V     +I GL  SG+L    +  ++  +HPDGNS D  + LI  K
Sbjct:  599 GCGFNVTNSNPTICINDLITEYNKQHKAELKPLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPKV-----SIVGLDDSGFLQVHQEGGEVVTVHPDGNSFDMLRNLILPK 724          

HSP 2 Score: 22.7126 bits (47), Expect = 3.533e-12
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = -1
Query:  554 IKVGGILCTSTYRTKKFNVSIG 619
            +K+GG+L  ST   + F + IG
Sbjct:  578 MKIGGVLVNSTLMGETFYILIG 599          
The following BLAST results are available for this feature:
BLAST of DN617577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPL1_MOUSE3.365e-1333.08Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=... [more]
BPL1_SCHPO9.606e-1334.53Biotin--protein ligase OS=Schizosaccharomyces pomb... [more]
BPL1_HUMAN3.533e-1231.30Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617577 ID=DN617577; Name=DN617577; organism=Citrus sinensis; type=EST; length=625bp
GGTGGGGACAAAAAAAAACAAAAACAAAAAAAACAAATACTAAATAAAAT
AACCTCTGGTCTTCACCGACCAAGTTGCGTGGCTGTGACAAATTTCCACC
AAGAGGAGTACTTCCACCAGGGGAAGGTACTCGGGTATCTTCTTTATTGA
AGTTTTCTTCTGATCAGTCCTTTGAAGAAGTCTAAACTATTGCCATCAGG
ATGAAGCTCACACATTTGATTGTCATCTCCCATAGCTAACAAATACCCTG
ATGATGTCAACCCCTGAATAGTCACCACATTTTCTACCACTTGGTCCTCA
TTTTTCTCCTGTATGATTACTCTCTGTCCGCTGTGTAGCCAAGTCTTGTA
ATATAGCTCCTCGAGACTTTGAAATCCTTGATTTATAAAAGTATCATAAA
AGGTCTCAAATTTATTAAAAAAGGCTGCAATAACATCTTCTCTTTGAAAT
TGGTAAGTAGAATCAGACAATTTTCTTAGAACTGCATTCAAGCATGTTGT
TGGTTCCTCATTATTAACGTTCAAACCTATACCATCAAAAGAGAAGTCCA
TTTACCAATACTGACATTGAACTTCTTTGTTCTATAAGTTGAGGTGCACA
AAATGCCTCCAACTTTAATCCCATT
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