DN617549

Overview
NameDN617549
Unique NameDN617549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  271 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP + G C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNY
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPS--ATWPCASGKRYYGRGPMQLSWNYNY 209          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 54/131 (41.22%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  238 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP + G CYN E      YC  S +  +PC PG +Y+GRG I I +NYNY
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQ--WPCAPGKKYFGRGPIQISYNYNY 128          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  271 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP + G C+  E +PS +YC  S +  +PC  G  YYGRG + + WNYNY
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASGKSYYGRGPMQLSWNYNY 194          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.643e-21
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP A G C+  E +PS +YC  S +  YPC PG  YYGRG + + WNYNY
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPLQLSWNYNY 125          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP A GLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NY
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGRGPIQISWNFNY 173          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 50/120 (41.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP A G CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNY
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNY 176          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 50/120 (41.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP A G CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNY
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNY 198          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.102e-19
Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP A G C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNY
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNY 198          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP A G C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNY
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNY 197          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  244 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  A G C+  E   S  YC  S +  +PC PG  YYGRG I +  NYNY
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGPIQLSHNYNY 148          
The following BLAST results are available for this feature:
BLAST of DN617549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHIB_ARATH1.139e-2140.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHID_SOLLC2.538e-2141.22Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_BRANA7.383e-2140.00Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA9.643e-2140.34Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI10_ORYSJ4.786e-2039.50Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_GOSHI8.163e-2041.67Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI8.163e-2041.67Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_PHAVU3.102e-1941.18Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU4.051e-1941.18Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_HORVU5.291e-1937.2126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617549 ID=DN617549; Name=DN617549; organism=Citrus sinensis; type=EST; length=631bp
ATTTCTCTCATCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGATCTGG
TGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGA
CAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAA
TCAGAGAAGGTGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAA
AGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATAT
CAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAAC
ACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTAC
TGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGC
TTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAG
ACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGNGGACT
TTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCT
ACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGT
GCTATACCTATATACTGGAACTATAACTATG
back to top