DN617547

Overview
NameDN617547
Unique NameDN617547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1130..1729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  336 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  337 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  337 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  341 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.618e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  337 RKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.618e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  317 RKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  336 RKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 RKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  291 RKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331
[Close]
BLAST of DN617547 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = -2 
Query:  477 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 599
            RKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  337 RKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DN617547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
ACT3_SOYBN1.175e-17100.00Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ1.175e-17100.00Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI1.175e-17100.00Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA1.175e-17100.00Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU2.618e-1797.56Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU2.618e-1797.56Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT_FUCVE5.832e-1797.56Actin OS=Fucus vesiculosus PE=2 SV=1[more]
ACT_FUCDI5.832e-1797.56Actin OS=Fucus distichus PE=2 SV=1[more]
ACT_COSCS5.832e-1797.56Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACT7_ARATH5.832e-1797.56Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617547 ID=DN617547; Name=DN617547; organism=Citrus sinensis; type=EST; length=600bp
TTTTTTTTTTTTTTTAGTATTAAATATATTTTAATAACCAAATTTATGAC
TGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAGCTATTAACATTA
ATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTA
GAAAATGAAATAGAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAA
CATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTG
AACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGTACAGAAATAAGC
CCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATCAATATCGAGATA
TGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCATGTCAACCAACTT
GAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACT
CACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGA
TGGACCAGACTCATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGG
TGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTC
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