DN617529

Overview
NameDN617529
Unique NameDN617529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13615 contig Csv1_Contig13615:965..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617529 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = -1 
Query:  315 QSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 620
            QSVV PI+   KRAP+KKNPL+ LNTML+LNPYAKTARRMSLLAEA+RV           KPI+            AWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  307 QSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
[Close]
BLAST of DN617529 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.020e-27
Identity = 63/102 (61.76%), Postives = 72/102 (70.59%), Query Frame = -1 
Query:  315 QSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 620
            QSVV PIK + KRA +KKNPLKNLN ML+LNPYAKTA+RMSLLAEAQRV           K +T            +WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  305 QSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
[Close]
BLAST of DN617529 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.513e-26
Identity = 63/102 (61.76%), Postives = 69/102 (67.65%), Query Frame = -1 
Query:  315 QSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 620
            QSVV PIK   KRA +KKNPLKNLN M +LNPYAKTA+RMSLLAEA RV           K +T            AWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  306 QSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
The following BLAST results are available for this feature:
BLAST of DN617529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL4_PRUAR3.507e-2864.7160S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH1.020e-2761.7660S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH2.513e-2661.7660S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01F09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617529 ID=DN617529; Name=DN617529; organism=Citrus sinensis; type=EST; length=620bp
TGAGAGCATCAATCCATTCAAGTATAATTGAAATTTATCCATAAGATAGT
ACCATTAAGACAATGAATCCGTCTCCTAAAACATATAACTCCAATTCTAA
CATTGAAGAAAATACTTCCACCTAGCCGATAGAGACAAAAAATGGAGGAA
GGAGAAACAAAAGTCTACACATTTCCCAAATCCACTCATCTTCCTTCCAC
ACATTCTCATCATGACTCAAAAGAGCCAAAGAGACTACAATTCAACAACA
AAATCAGTAAAGATAAACAAAATATTGTCTTGAAAACAAAATTAAAAAAC
CAACAATCAGATTACTGTGAGACACCCAACCATTTTGAGAAGTTCTCAAA
CTCAGTATAATCACTGTCTGAGATCATCGTCTGGTACCATGCCTTGCCTG
CAGCCTTGATCGCAGCAGCCTCCTCCTTAGTGATGGGCTTCCTTTTCTTG
TCGAGCTTCTCCTTCTTAGCTTTAACCCGTTGTGCCTCAGCCAAAAGAGA
CATCCTCCGAGCAGTCTTAGCATATGGGTTCAACCGCAACATCGTATTCA
AGTTCTTGAGAGGATTTTTCTTCATTGGAGCCCTCTTAACCTCAGTCTTA
ATCGGCCTTACAACAGACTG
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