DN617508

Overview
NameDN617508
Unique NameDN617508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig599 contig Csv1_Contig599:13..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617508 vs. ExPASy Swiss-Prot
Match: FABI_BRANA (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 74/135 (54.81%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  254 MAATAACS-LQMAAVKPCISSSHRXXXXXXXXXXXXXXXXXWTKLSSASHISS-GQPFLRSFTSSSVKFDKVVTRAMAESSTNKPISGLPIDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEILVGTWVPALNI 652
            MAATAA S LQMA  +P IS++                     K++   H+S+ G     S   +S K     T+AM+ESS +K  SGLPIDL+GKRAFIAG+ADDNGYGWA+AKSLAAAGAEILVGTWVPALNI
Sbjct:    1 MAATAAASSLQMATTRPSISAASSKARTYVVGANPRNAY----KIACTPHLSNLGCLRNDSALPASKKSFSFSTKAMSESSESKASSGLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI 131
The following BLAST results are available for this feature:
BLAST of DN617508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FABI_BRANA7.387e-2754.81Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01E20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617508 ID=DN617508; Name=DN617508; organism=Citrus sinensis; type=EST; length=653bp
TACGAAGCGTCCTCCATCAGTTTCTCTCCAAACAGGGACAGTCACGACAC
TACAAAGCCTCGATCTCATCGAACTCAACTACTTTAAACTCTCGAAAGCT
TCATCAGCTTTTGTTTTCTTTCAGAGGAACCCCCCCAAAAGAGAAAGAAA
AAAGCCATTTTTTTTAACTCAATACTTCTCTCTTTTCCTCACATTGGCGC
TTCCAATCGTTCAAAGGTATTTATTTTCCTCTGCAAGAGTTGGTGCATTG
AAAATGGCGGCAACAGCAGCTTGTAGCCTTCAAATGGCAGCAGTAAAGCC
ATGCATTTCCTCTTCTCACAGAGGTGTCAAAGCAGGTGTTGCAGTTGTTG
GTGGCAACTCTAAGGGGGCATCGTGGACCAAGCTTTCTAGTGCTTCTCAC
ATATCATCTGGGCAACCTTTCCTGCGGAGTTTTACATCATCTTCAGTAAA
ATTTGATAAGGTTGTAACAAGGGCAATGGCTGAATCTAGCACTAACAAGC
CTATTTCCGGATTGCCTATTGATTTGAAAGGTAAGAGGGCATTTATTGCT
GGTGTAGCTGACGACAACGGATATGGTTGGGCTATAGCAAAATCTCTTGC
TGCTGCAGGAGCTGAAATTTTGGTTGGAACATGGGTTCCTGCTTTGAACA
TTT
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