DN617502

Overview
NameDN617502
Unique NameDN617502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3683 contig Csv1_Contig3683:123..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.751e-82
Identity = 153/166 (92.17%), Postives = 162/166 (97.59%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIPLD 546
            MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKH+G+I+LDDVIEIAK+M+ RSMAK+L+GTVKEIL TCVSVGCTVDGKDP+DLQQEI DGDVEIPLD
Sbjct:    1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.632e-81
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDVIEIAK+MRPRS+AK+LSGTVKEILGTCVSVGCTVDGKDP+DLQ+EI  GD++IP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.140e-80
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+D+QQEI DG+VEIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.767e-80
Identity = 145/164 (88.41%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+DLQQEI +G++EIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.317e-65
Identity = 124/155 (80.00%), Postives = 137/155 (88.39%), Query Frame = 1
Query:   76 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            VV+V VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G++T+ D+IEIA+VMRPRS AKDL+   KEILGT VSVGC VDGKDPRD+   I DG +EIP
Sbjct:    1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.658e-65
Identity = 118/164 (71.95%), Postives = 145/164 (88.41%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPKFDP++V  +++R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK KN+ H+GN++LD++IE+A+ MR +S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIP
Sbjct:    1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.296e-63
Identity = 113/164 (68.90%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.296e-63
Identity = 113/164 (68.90%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.916e-63
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKHNGNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of DN617502 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.012e-62
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   49 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 540
            MPPKFDP++V  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of DN617502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL12_PRUAR1.751e-8292.1760S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH5.632e-8189.6360S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH2.140e-8089.0260S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH4.767e-8088.4160S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_CHLRE3.317e-6580.0060S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_SCHPO5.658e-6571.9560S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CAEEL5.296e-6368.9060S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR5.296e-6368.9060S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT6.916e-6370.1260S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE2.012e-6270.1260S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617502 ID=DN617502; Name=DN617502; organism=Citrus sinensis; type=EST; length=682bp
CAAAAAGCACTTCACACACTCTTTGTAGCCGTAACCAGCAGAGCAATCAT
GCCGCCGAAGTTCGACCCGAGCCAAGTGGTGGACGTGTACGTCCGCGTGA
CCGGTGGCGAGGTGGGAGCCGCCAGTTCCCTCGCCCCAAAGATCGGTCCC
CTCGGTCTCTCCCCAAAGAAAATCGGAGAGGACATCGCCAAGGAAACCGC
CAAGGACTGGAAGGGCTTACGTGTCACCGTCAAGCTCACCGTCCAGAACC
GTCAGGCCAAGGTCGCCGTCGTTCCCTCCGCCGCCGCCCTGGTGATTAAA
GCCCTCAAGGAACCCGAGAGGGACAGGAAGAAGACCAAGAACATCAAGCA
CAACGGCAACATTACCCTCGATGACGTCATCGAAATCGCAAAAGTGATGC
GGCCCAGGTCGATGGCTAAGGATTTGAGTGGCACCGTTAAGGAGATTTTG
GGCACATGCGTTTCTGTTGGGTGTACGGTCGATGGCAAGGACCCTAGGGA
CCTGCAGCAGGAGATCACTGATGGTGATGTCGAAATTCCTCTTGATTGAA
GACTCTGTTTGTGAGGGGGTCTATTTTAGATTTTAATTTTTGTTTTTATC
TCTATATATCAGTGCCTTTTTTTTTAATTATCAGTTTTGGATCTTTACAA
GGATTTTGATGATGTCTCCAATTATTCGAGCT
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