DN617468 | Citrus Genome Database

Overview


Name	DN617468
Unique Name	DN617468
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	469

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4351	contig	Csv1_Contig4351:621..1089.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.734e-40
Identity = 83/97 (85.57%), Postives = 84/97 (86.60%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLADDVNLEEFVM KDEFSGADIKAICTEAGLLALRERRMKVTH DF           KEGVPEGLYM
Sbjct:  352 PGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 448

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.377e-39
Identity = 82/97 (84.54%), Postives = 84/97 (86.60%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLA+DVNLEEFVM KDEFSGADIKAICTEAGLLALRERRMKVTH DF           KEGVPEGLYM
Sbjct:  347 PGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.008e-39
Identity = 81/97 (83.51%), Postives = 84/97 (86.60%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPDIKTRRRIFQIHTS+MTL++DVNLEEFVM KDEFSGADIKAICTEAGLLALRERRMKVTH DF           KEGVPEGLYM
Sbjct:  347 PGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKEGVPEGLYM 443

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.989e-35
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPDIKT+R+IF+IHT++M L++DVNLEEFVM KD+ SGADIKAICTE+GLLALRERRM+VTHTDF             G PEGLYM
Sbjct:  343 PGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAGAPEGLYM 439

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.070e-34
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L+E +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  344 PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTEGTPEGLYL 440

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.129e-33
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF           +EG PEGLY+
Sbjct:  344 PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.129e-33
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF           +EG PEGLY+
Sbjct:  344 PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.129e-33
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF           +EG PEGLY+
Sbjct:  344 PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.129e-33
Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT+RRIF IHTSRMTLA+DVNL E +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF           KEG PEGLY+
Sbjct:  343 PGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 439

[Close]

BLAST of DN617468 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.782e-32
Identity = 70/97 (72.16%), Postives = 76/97 (78.35%), Query Frame = -1

Query:  179 PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMPKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXKEGVPEGLYM 469
            PGRIDRKIEFPLPD KT+RRIFQIHTSRMTL  +VNLEEF+  KDE SGADIKA+CTEAGLLALRERRM+VT  DF           KEG PE LY+
Sbjct:  347 PGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKEGAPEELYL 443

The following BLAST results are available for this feature:

BLAST of DN617468 vs. ExPASy Swiss-Prot

BLAST of DN617468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PRS4_ORYSJ	4.734e-40	85.57	26S protease regulatory subunit 4 homolog OS=Oryza...	[more]
PRS4B_ARATH	1.377e-39	84.54	26S proteasome regulatory subunit 4 homolog B OS=A...	[more]
PRS4A_ARATH	4.008e-39	83.51	26S proteasome regulatory subunit 4 homolog A OS=A...	[more]
PRS4_DICDI	5.989e-35	72.16	26S protease regulatory subunit 4 homolog OS=Dicty...	[more]
PRS4_CHICK	5.070e-34	72.16	26S protease regulatory subunit 4 OS=Gallus gallus...	[more]
PRS4_RAT	1.129e-33	71.13	26S protease regulatory subunit 4 OS=Rattus norveg...	[more]
PRS4_MOUSE	1.129e-33	71.13	26S protease regulatory subunit 4 OS=Mus musculus ...	[more]
PRS4_HUMAN	1.129e-33	71.13	26S protease regulatory subunit 4 OS=Homo sapiens ...	[more]
PRS4_DROME	1.129e-33	73.20	26S protease regulatory subunit 4 OS=Drosophila me...	[more]
PRS4_CAEEL	2.782e-32	72.16	Probable 26S protease regulatory subunit 4 OS=Caen...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_01D24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN617468 ID=DN617468; Name=DN617468; organism=Citrus sinensis; type=EST; length=469bp
TTTTTTTTTTTTTTTTTGAAACCAAAGCGGTTGCTAACTTGCATGTAGAC
CTTACAAAACAACAGTAAACAACAATGTTTAAAGTCCCAAAGATGCCGCT
TCGAAAGTGCTAACAGTTGAATTTGGAAATACAGCAAAATGAACTAAACA
GTAAAATGTAGAACAATGAAGTCTTTCACATATAAAGCCCTTCTGGCACC
CCTTCTTTCTTCTTGAACATCACCTTTTCCTTTGCTTTCTTAAAATCTGT
ATGCGTCACCTTCATGCGGCGCTCTCTCAAAGCAAGCAAACCAGCTTCAG
TACATATAGCCTTTATATCAGCTCCAGAGAACTCATCTTTGGGCATAACA
AACTCTTCCAAGTTGACATCATCAGCCAAGGTCATCCTTGATGTGTGAAT
CTGGAAGATACGTCTCCTAGTCTTGATATCAGGAAGAGGAAATTCAATCT
TTCTATCTATTCGACCTGG