DN617445

Overview
NameDN617445
Unique NameDN617445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617445 vs. ExPASy Swiss-Prot
Match: PPR87_ARATH (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = -3 
Query:  295 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSKVSEAKELIGLVKEKFTKNVDTWKEIEAGLPQ 582
            K ++IM N G  P+S  YFT++Y++CKGGD+ETAL  CKES+ K WVP+F+ MKSLV GLA  SKV EAKELIG VKEKFT+NV+ W E+EA LPQ
Sbjct:  313 KLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
[Close]
BLAST of DN617445 vs. ExPASy Swiss-Prot
Match: PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = -3 
Query:  298 YRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSKVSEAKELIGLVKEKFTKNVDTWKEIEAGLP 576
            + +M  +G  P+S  YFT+++ +CKGGD+ETAL  C+ES+ K WVP+F+ MK LV GLA  SKV EAKELI +VKEKFT+NVD W E+EA LP
Sbjct:  310 FEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402
The following BLAST results are available for this feature:
BLAST of DN617445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPR87_ARATH4.635e-3264.58Pentatricopeptide repeat-containing protein At1g61... [more]
PPR33_ARATH2.015e-2759.14Pentatricopeptide repeat-containing protein At1g11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617445 ID=DN617445; Name=DN617445; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTGTACTCCATATCATATGCTAAAATTGCCAAAATCATCATAAC
CATGATGCCAGACAATAAATCAGGTCTACAAGCATAAAAATAAGTCATGG
TGCAAGTTTCATAGCTTGGGAAGCATATCCTCCAACCCGTCTGTAGATAG
CTTCAAGAACTACTTTTATCTATCTCAATGATTCAACAAATTAAACAAAA
TCTCTAGACTGGAAGATCCTATAAAATATTCCCAGATCCTAATCTTAATC
ATTGTTCATGAAATGGAAAACAATAAAACGATGCATACTCACTATTGAGG
CAAGCCTGCTTCAATCTCCTTCCAGGTATCCACATTCTTGGTGAACTTCT
CCTTCACTAGGCCAATAAGCTCCTTTGCTTCACTGACTTTGGAAACACCA
GCCAGCCCAGTCACCAATGATTTCATAGTCGTGAAATTAGGCACCCAACC
CTTCGCTATACTCTCCTTGCAGAAGCCCAGTGCTGTCTCATAATCCCCAC
CTTTACACATGAAATACACCATAGTAAAATATACAGAGCTATTTGGCGAC
AACCCACTGTTACTCATAATCCTATAAAACTTCT
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