DN617442

Overview
NameDN617442
Unique NameDN617442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1473 contig Csv1_Contig1473:99..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.528e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = -1
Query:  267 HSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 521
            HSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:   11 HSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.528e-41
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = -1
Query:  267 SGHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 527
            S HSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    9 SRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.405e-41
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = -1
Query:  267 HSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 521
            HSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   11 HSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.807e-41
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = -1
Query:  267 SGHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 527
            S HSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    9 SRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.916e-40
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = -1
Query:  267 SGHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 527
            S HSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:    9 SRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_DICDI (60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.625e-17
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  267 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 518
            SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP +YK   LP++RRTV+RAYGG      VR RI+RAF
Sbjct:   12 SYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34A_SCHPO (60S ribosomal protein L34-A OS=Schizosaccharomyces pombe GN=rpl34a PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.477e-17
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  267 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 518
            +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RL  N++TV RAYGG LS  AV++RI+RAF
Sbjct:   12 AYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34B_SCHPO (60S ribosomal protein L34-B OS=Schizosaccharomyces pombe GN=rpl34b PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.902e-16
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  267 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 518
            +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RL  N++ V RAYGG LS  AV++RI+RAF
Sbjct:   12 AYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_AEDTR (60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = -1
Query:  267 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 518
            SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct:   12 SYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
BLAST of DN617442 vs. ExPASy Swiss-Prot
Match: RL34_AEDAL (60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = -1
Query:  267 SYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 518
            SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV R +GGVL    +RERIIRAF
Sbjct:   12 SYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
The following BLAST results are available for this feature:
BLAST of DN617442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL34_TOBAC1.528e-4195.2960S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL341_ARATH1.528e-4193.1060S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL34_PEA3.405e-4195.2960S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL342_ARATH5.807e-4191.9560S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH4.916e-4089.6660S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
RL34_DICDI2.625e-1753.5760S ribosomal protein L34 OS=Dictyostelium discoid... [more]
RL34A_SCHPO4.477e-1751.1960S ribosomal protein L34-A OS=Schizosaccharomyces... [more]
RL34B_SCHPO2.902e-1650.0060S ribosomal protein L34-B OS=Schizosaccharomyces... [more]
RL34_AEDTR8.444e-1652.3860S ribosomal protein L34 OS=Aedes triseriatus GN=... [more]
RL34_AEDAL8.444e-1652.3860S ribosomal protein L34 OS=Aedes albopictus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617442 ID=DN617442; Name=DN617442; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTTTGCCCACAATGGTTATCAACTGAGTGCTTTAAGA
ATTTAGTTCATATAAGCAAGTGCGGGATTACAATTTCAAATAAAGAAAAA
CCTAGATTACTTCTCCATGAGTCAATATCATCATCCAAAACAACAGATAT
ACTAAAAGGTAGTTCGAAACTCATTAAATATTCCAGTCTTAACTCTTAGC
AGCTTGCTTCTCTTTTGCCTTCTGAATCTTCAAGACCTTCTTCACAATCT
TCTGCTCTTCCACCAAAAAGGCACGGATGATTCTTTCCCTGACAGCAGCT
CCAGACAATACTCCACCATAAGCACGGTTCACAGTCCTCCTGTTTCTGGG
CAATCTGGACCTCTTATATTCAGCGGGTCTCAAATGAGGAATCCCTTGAA
TTCTCTTGCCAGTCACAGGACACTTAGGTCCACTAGCTCTTTTCTTCGTG
CTCTGGTACACCAACTTCCCTCCAGGGGTTTTGACGACGCGGTGCTGGTT
CGATTTGGTGGCATAGCTGTGCCCGCTTCC
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