DN617432

Overview
NameDN617432
Unique NameDN617432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:614..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 76/120 (63.33%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  213 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKAPAT 569
            RDFGS            ATQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y  LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  128 RDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.397e-31
Identity = 69/116 (59.48%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  222 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 569
            RDFGS            ATQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+ LLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL+ A A
Sbjct:  103 RDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 120.939 bits (302), Expect = 4.291e-27
Identity = 66/116 (56.90%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  222 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 569
            RDF S            ATQFG+GWAWL Y                   ++ L VVKTPNAVNPLV     LLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE AKA
Sbjct:  112 RDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.081e-20
Identity = 53/113 (46.90%), Postives = 64/113 (56.64%), Query Frame = -3
Query:  228 DFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 566
            DFGS            ATQFGSGWAWLV                    + +L V KT NA NP+    + LLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L  A
Sbjct:  105 DFGSFDAFVEAFKQAGATQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 52/109 (47.71%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  237 FGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 563
            FGS            ATQFGSGWAWLV                  +   +L V KTPNA NPLV     LLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  107 FGSLDKFKEEFSNAAATQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.931e-19
Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = -3
Query:  222 DFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 566
            DFGS            ATQFGSGWAWLV                    + +L + KT NA  P+    + LLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S     A A
Sbjct:  105 DFGSFENFVTEFKQAAATQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = -3
Query:  237 FGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 563
            FGS            A QFGSGWAWLV                  + D +L + KT N VNPL +  ++LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  109 FGSVAKFKEDFAAAGAGQFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 4.755e-18
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  255 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 569
            +DFGS            ATQFGSGWAWL+                  +   +L V KTPNA NPL     +LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:  105 QDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.082e-17
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = -3
Query:  237 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 569
            +DFGS              QFGSGWAWL+Y                   D  L ++KT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  115 KDFGSFEEFCEQFKQEAVGQFGSGWAWLIYH------------------DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of DN617432 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.026e-17
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = -3
Query:  237 RDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 569
            +DFGS              QFGSGWAWLVY                   D  L ++KT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  115 KDFGSFEGFCEQFKQEAVGQFGSGWAWLVYH------------------DNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
The following BLAST results are available for this feature:
BLAST of DN617432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
SODF_SOYBN2.125e-3463.33Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL6.397e-3159.48Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH4.291e-2756.90Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_SYNY35.081e-2046.90Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO1.478e-1947.71Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNE71.931e-1945.22Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RHOCA4.301e-1943.12Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_ANASP4.755e-1843.81Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RICCN3.082e-1736.94Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RICFE4.026e-1737.84Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617432 ID=DN617432; Name=DN617432; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTATTATACCCTCGATTGTTATAAGAAGAAACCAAC
ACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGTACCAAAGACCT
AACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAACATAGTGTTGCT
ACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTTCATCATTCTTC
CATTTCAATCTAGGTAGCTGGAGCTTTGGCAGTTTCCAGTCTTTTACTTA
CTGATTCCCATGATACAAGCTTGTCCATGAAAACTGATATGTAATCAGGT
CGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCATACATCAATAGT
AAGGAGAGACGAGTAATCCCAGACAAGAGGATTGACAGCATTGGGAGTCT
TCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAGGATTCACCGCA
TTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGCCAGGCCCAACC
AGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTCAAGAAATTTTT
CAAAAGAACCAAAATCCCTTT
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