DN617429

Overview
NameDN617429
Unique NameDN617429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617429_ssr188 microsatellite DN617429_ssr188:188..202. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5299 contig Csv1_Contig5299:500..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617429 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.958e-43
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = -3
Query:  247 FIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 576
            F+DRLP SSATF C+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG  I      V+EN  EGN   RL++YAAMFMSIRPHDHLE
Sbjct:  611 FLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726          
BLAST of DN617429 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.558e-24
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  259 FIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 576
            F++RLP SS+T   +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+          +R R P+      GE    ++L  YAA+  S +P+
Sbjct:  576 FVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687          
BLAST of DN617429 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  283 LPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 564
            LP+S+ T   +E +EAF L A +L+++ + FR +  +++L+ T RYYS  WRTWAA  +Q AWRRY+ +     +S+ E+    +    +  AA
Sbjct:  567 LPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659          
BLAST of DN617429 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  310 LPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 564
            LP+S+ T   +  +EAF L A++L+++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY+ R     ++  E+ E  E
Sbjct:  567 LPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650          
BLAST of DN617429 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = -3
Query:  319 LPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 564
            LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWA+  IQ AWRRY  R    +  + E  E
Sbjct:  588 LPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668          
The following BLAST results are available for this feature:
BLAST of DN617429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CNGC2_ARATH1.958e-4375.00Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH1.558e-2447.41Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG14_ARATH2.757e-1337.23Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG17_ARATH3.048e-1240.00Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC7_ARATH3.370e-1137.80Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617429 ID=DN617429; Name=DN617429; organism=Citrus sinensis; type=EST; length=578bp
TTATTTTTAAAAAAAATTCATTCAAATATTATTAAATAATGACTGAGAAA
TCTAGCTTGCTTTCTTATCATTCATCCGCTAGCAAAAACCTGAAGTAGGA
AAGAATTTCCCCCCCTTTTTCTTTTATTTCAAATCCAATTGTCTAAATCG
AGTACAAGTTCGATGTTCCATGGCTAAATTGCTACCCAAAGAAAAGAAAA
GAAACTTCATTCATCAATGGAAGAATTGCACGACACGGTGTGCTTATTCA
AGGTGATCATGTGGTCTAATTGACATGAACATAGCAGCATATCTCATAAG
TCTGTTGCTCTCATTGCCTTCTCCATTTTCAGTTACAGAAATCACAGGAC
CTCTAGTCCTCATCCTGTATCTTCTCCAAGCAAATTGAATATTCACAGCC
GCCCATGTCCTCCAATTTGATGAATAATATCTCGCGGTTCTCTTCAGCCT
TTCGTTGGCAAATTTGTACCGGAAATGATCTGTGATGTATCGGAGATTCT
TTGCATCTAACCCAAATGCTTCTATGGATTCCATACAAAAAAATGTTGCT
GATGATGCTGGCAGCCGATCGATAAACG
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