DN617428

Overview
NameDN617428
Unique NameDN617428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11897 contig Csv1_Contig11897:468..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.312e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = -3
Query:  394 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSDD 567
            MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDP  DD
Sbjct:  383 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPHQDD 440          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = -3
Query:  388 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSDDNQ 567
            MDLNFQLFETATLFITV+VVAF LQEGTSNYFKGLMLILCYLIVAASFFVH DP S +N+
Sbjct:  378 MDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNNK 437          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = -3
Query:  397 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSD 567
            MDLNFQLFETA LFITVIVVAFFLQEG+SNYFKGLMLILCYLIVAASFFVHEDP  D
Sbjct:  383 MDLNFQLFETAMLFITVIVVAFFLQEGSSNYFKGLMLILCYLIVAASFFVHEDPHQD 439          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  391 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSDDN 567
            MDLNFQLFETATLFITV+VVAF LQ+G +NY KGLMLILCYLIVAASFFVH DP S D+
Sbjct:  359 MDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVDPQSSDD 417          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  406 MDLNFQLFETATLFITVIVVAFFLQ-EGTSNYFKGLMLILCYLIVAASFFVHEDP 567
            MDLN QLFETATL ITVIVVAFFLQ EGTSNYFK LMLILCYLIVAASFFVHEDP
Sbjct:  391 MDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = -3
Query:  400 PMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTS 570
            PMDLNF LFETA+L  TV+VVAF LQ+GTSN  KGLML LCYLIVAASF+VH DP S
Sbjct:  382 PMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADPNS 438          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.664e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = -3
Query:  385 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSDDNQV 567
            MDLNF + ET++L + +I+ AF LQ+GTS+Y KGL+L+LCY+I+AA FFV + P  +D  V
Sbjct:  385 MDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFVDQIPQPNDLDV 445          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  391 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTSDDN 567
            MDL+F+L ET +LF+ V+V AF LQ+GTS+Y KG++L+LCY+++ A FFV   P    N
Sbjct:  375 MDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLLLCYIVIGACFFVARQPAGHAN 433          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  400 MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTS 567
            MDLNF L ETA   ++++V +  LQ+GTSNY KGL+L+LCY+++AA FFV   P+S
Sbjct:  387 MDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSS 442          
BLAST of DN617428 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = -3
Query:  418 PMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFV 570
            PMDL+F L ET +LF+ ++V AF LQEG S+Y KGL+L+LCY +++  FFV
Sbjct:  384 PMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFV 434          
The following BLAST results are available for this feature:
BLAST of DN617428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAX5_ARATH5.312e-2596.55Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ2.232e-2388.33Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX2_ARATH3.807e-2392.98Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX3_ORYSJ2.728e-2183.05Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX6_ARATH3.939e-2092.73Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ3.687e-1877.19Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
CAX3_ARATH4.664e-1354.10Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ1.357e-1252.54Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH1.772e-1255.36Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ1.500e-1156.86Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617428 ID=DN617428; Name=DN617428; organism=Citrus sinensis; type=EST; length=572bp
TGGCGTTATAAATCTTCCATTTAATTGGCAGTCATTGAAATAGTGTGCCA
CAAAGTGGAAGCAACAAATGGAAATCTCTTCAAAAAGAATTGAGAAAGAG
TTACAAGGCAAAGAGAAATGAACCGTTTTTCTCTGTGATATACACAATTT
TTCTTACTCGTCATAAGCATTTAGCACCAAAGCAGGTATTGAAAGGATAG
AGCACAAAAAACAGCAAGAAACCCGCACAATATGTTACTGAGCAAGAGCT
AGGGAAGTCAAGATAATGGCTTGTCTGCATTTCGAAGCTGAATATATAAA
TATATACAGCAGCCCCCAAGTTGATCCGTAGCTTCAGGAAATACATCTCA
TAAGCCGATATGCTGCTTTCGTGAACTAAGTTTTTACTTGATTATCATCT
GAAGTAGGATCTTCGTGCACAAAGAAACTAGCAGCTACAATCAGATAGCA
AAGAATCAGCATGAGTCCTTTAAAGTAATTAGAAGTTCCTTCCTGCAGAA
AGAATGCCACAACTATAACAGTTATGAAAAGAGTTGCCGTCTCAAAAAGT
TGAAAGTTTAAGTCCATAGGTC
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