DN617427

Overview
NameDN617427
Unique NameDN617427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5723 contig Csv1_Contig5723:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.273e-57
Identity = 104/131 (79.39%), Postives = 117/131 (89.31%), Query Frame = -1
Query:  198 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 590
            KYAAMLAEKM+  GATGWLVNTGWSGGSYG GNRIKLA+TR+IIDAIH G+LL+A+Y KT +FG EIPTEIEG+PSEILDP N+WSD KA+KDTL+KLG LFKKNFE F NHKIG D KLT+EILAAGP+F
Sbjct:  541 KYAAMLAEKMKSQGATGWLVNTGWSGGSYGVGNRIKLAYTRKIIDAIHSGSLLKANYKKTEIFGFEIPTEIEGIPSEILDPVNSWSDKKAHKDTLVKLGGLFKKNFEVFANHKIGVDGKLTEEILAAGPIF 671          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.878e-53
Identity = 100/131 (76.34%), Postives = 111/131 (84.73%), Query Frame = -1
Query:  198 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 590
            KYAAMLAEKMQK+G TGWLVNTGWSGG YG GNRIKL +TR+IIDAIH G LL A+Y KT VFGLEIPTEI GVPSEILDP NTW+D  AYK+TLLKL  LFK NFE F ++KIG+DN LT++ILAAGP F
Sbjct:  494 KYAAMLAEKMQKYGRTGWLVNTGWSGGRYGVGNRIKLPYTRKIIDAIHSGELLTANYKKTEVFGLEIPTEINGVPSEILDPVNTWTDKAAYKETLLKLAGLFKNNFEVFASYKIGDDNSLTEQILAAGPNF 624          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.394e-52
Identity = 97/129 (75.19%), Postives = 111/129 (86.05%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            +YAAMLAEKM+KHGATGWLVNTGWSGGSYGSGNRIKLA+TR+IIDAIH G LLEA+Y+KT VFGLEIP  IEGVPS ILDP NTWSD   Y +TLLKLG LFKKN+EG   +++  D++L +EILAAGP
Sbjct:  540 RYAAMLAEKMKKHGATGWLVNTGWSGGSYGSGNRIKLAYTRKIIDAIHSGALLEANYSKTRVFGLEIPDAIEGVPSHILDPINTWSDKDGYHETLLKLGGLFKKNYEGIHTYQVERDSELAEEILAAGP 668          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.569e-51
Identity = 98/131 (74.81%), Postives = 110/131 (83.97%), Query Frame = -1
Query:  198 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 590
            KYAAMLAEKMQK+GATGWLVNTGWSGG YG G RI+L +TR+IIDAIH G LL A+Y KT VFGLEIPTEI GVPSEILDP  TW+D  AYK+ LL+LG LFK NFE F ++KIG+D+ LTDEILAAGP F
Sbjct:  536 KYAAMLAEKMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYQKTEVFGLEIPTEINGVPSEILDPIYTWTDKAAYKENLLRLGGLFKNNFEVFASYKIGDDSSLTDEILAAGPNF 666          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.566e-51
Identity = 98/131 (74.81%), Postives = 108/131 (82.44%), Query Frame = -1
Query:  198 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPLF 590
            KYAAMLAEKMQK+GATGWLVNTGWSGG YG GNRIKL +TR+IIDAIH G LL ASY KT VFGLEIPT I GVPSEIL P NTW+D  AYK+TLLKL  LFK NFE F ++KIG +N LT++ILAA P F
Sbjct:  496 KYAAMLAEKMQKYGATGWLVNTGWSGGRYGVGNRIKLPYTRKIIDAIHSGELLNASYKKTEVFGLEIPTAINGVPSEILGPVNTWTDKAAYKETLLKLAGLFKNNFEVFASYKIGNNNSLTEQILAAAPNF 626          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_DICDI (Phosphoenolpyruvate carboxykinase [ATP] OS=Dictyostelium discoideum GN=pckA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.356e-31
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = -1
Query:  201 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGPL 590
            KYA MLA ++ KH A  WL+NTGW+GGS+G G+RIKLA+TR IIDAIH G L +   TK  VFG ++P    GVPSEIL P N W+D + Y  T+ KL  LF +NF+ F        +K + E++AAGP+
Sbjct:  437 KYAEMLASQLHKHSARAWLINTGWTGGSHGVGSRIKLAYTRAIIDAIHSGELEKIPTTKMDVFGFQVPNSCPGVPSEILMPINGWADKEKYVSTMHKLAKLFIENFKKF-------QDKASPELVAAGPI 559          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_CANGA (Phosphoenolpyruvate carboxykinase [ATP] OS=Candida glabrata GN=PCK1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.429e-28
Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGN-RIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKA-YKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            +YA MLAEKM +H A  WL+NTGW+G SY SG  R  L +TR I+DAIH G+L +A +   P+F L++P  +EGVPSE+L+P   WS+ +A Y+  + KL  LF +NF+ +        +K T ++LAAGP
Sbjct:  419 RYATMLAEKMHEHSANAWLINTGWTGSSYVSGGKRCALKYTRAILDAIHDGSLAKAEFESLPIFNLQVPKAVEGVPSELLNPARNWSEGEAKYQSAVSKLAGLFVENFKTY-------QDKATSDVLAAGP 542          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_GEOMG (Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YA +L EK+ +HG + WLVNTGWSGG YG G+R+K+A++R +++A   GTL   S+ K   FGL+IPT   GVP+E+L+P+NTW D   Y +T   L   F+KNFE +
Sbjct:  411 YAKLLGEKIARHGVSCWLVNTGWSGGPYGVGSRMKIAYSRALVNAAIDGTLNAGSFVKDQFFGLDIPTGCSGVPAEVLNPKNTWVDKTKYDETATMLVERFRKNFEQY 518          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_ASHGO (Phosphoenolpyruvate carboxykinase [ATP] OS=Ashbya gossypii GN=PCK1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = -1
Query:  204 KYAAMLAEKMQKHGATGWLVNTGWSGGSY-GSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKA-YKDTLLKLGTLFKKNFEGFVNHKIGEDNKLTDEILAAGP 590
            KYA MLAEKM +H A+ WL+NTGW+G SY   G R  L +TR I+D+IH GTL +A Y   PVFGL IP  +EGVP+E+L+P   W + +  Y   +  L + F +NF      KI +D + T+E++ AGP
Sbjct:  416 KYATMLAEKMSQHNASAWLINTGWTGSSYTAGGKRCPLKYTRAILDSIHDGTLAQAEYETLPVFGLSIPKAVEGVPAELLNPAKNWVEGEGKYASAVSALASKFTENF------KIYQD-QATEEVVRAGP 539          
BLAST of DN617427 vs. ExPASy Swiss-Prot
Match: PCKA_RUBXD (Phosphoenolpyruvate carboxykinase [ATP] OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pckA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  264 YAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHCGTLLEASYTKTPVFGLEIPTEIEGVPSEILDPENTWSDMKAYKDTLLKLGTLFKKNFEGF 587
            YAAML+EK+++HG+  +L+NTGWSGG YG G R+ +A TR+++ A+  G + E+     P FGL++P E+ GVPS IL+P  TW+D  AY D   KL  LF++NF+ F
Sbjct:  410 YAAMLSEKLREHGSRCYLINTGWSGGPYGVGERVDIAATRQMVRAVIAGNIDESKTYTDPFFGLQVPLEVPGVPSGILNPRETWADRAAYDDQAAKLADLFRENFKKF 517          
The following BLAST results are available for this feature:
BLAST of DN617427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
PCKA_ARATH7.273e-5779.39Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA1_UROPA4.878e-5376.34Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
PCKA_CUCSA5.394e-5275.19Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_MAIZE1.569e-5174.81Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA2_UROPA4.566e-5174.81Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA_DICDI2.356e-3151.54Phosphoenolpyruvate carboxykinase [ATP] OS=Dictyos... [more]
PCKA_CANGA1.429e-2847.33Phosphoenolpyruvate carboxykinase [ATP] OS=Candida... [more]
PCKA_GEOMG7.843e-2750.00Phosphoenolpyruvate carboxykinase [ATP] OS=Geobact... [more]
PCKA_ASHGO1.024e-2647.33Phosphoenolpyruvate carboxykinase [ATP] OS=Ashbya ... [more]
PCKA_RUBXD1.338e-2649.07Phosphoenolpyruvate carboxykinase [ATP] OS=Rubroba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617427 ID=DN617427; Name=DN617427; organism=Citrus sinensis; type=EST; length=590bp
ATCTCTATAGCTAAAAATCCAAAAACTAAATGAATCCTTCTTGAGTTGTA
GTACGAGTGAAGTAAATAGTAGAAGCTCAACGTAGAGAAGCATATGGAGC
TTTATAAATTTAACAAACATATGACTACATTGCAAATTAAGTTATATCTT
ATTTCTTGGTGTCCCATAGGCACCAGATCGATCTTAAAGACTGATTAGAA
AAGAGGGCCGGCTGCAAGAATCTCGTCAGTAAGCTTGTTGTCCTCTCCAA
TCTTGTGATTCACAAAGCCCTCAAAATTCTTTTTGAAAAGGGTTCCTAGC
TTCAAGAGTGTATCCTTGTAGGCCTTCATGTCCGACCATGTATTTTCTGG
ATCCAGGATTTCTGAGGGCACTCCCTCTATCTCAGTTGGGATCTCAAGCC
CAAAAACTGGAGTCTTTGTGTAGCTTGCCTCCAAAAGAGTCCCACAATGT
ATTGCATCAATGATTCTTCTCGTAAAAGCTAATTTAATACGATTTCCTGA
CCCATAGCTTCCACCTGACCAGCCAGTGTTAACCAACCATCCAGTAGCCC
CATGCTTCTGCATTTTTTCAGCCAGCATGGCAGCATACTT
back to top